KEGG   PATHWAY: bvan00020
Entry
bvan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bombus vancouverensis nearcticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvan00020  Citrate cycle (TCA cycle)
bvan00020

Module
bvan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvan00020]
bvan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bvan00020]
bvan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvan00020]
bvan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bvan00020]
bvan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvan00020]
Other DBs
GO: 0006099
Organism
Bombus vancouverensis nearcticus [GN:bvan]
Gene
117161545  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
117156992  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
117157006  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
117155419  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
117160842  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
117157171  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
117156627  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
117157045  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
117166662  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
117161701  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
117158523  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
117156221  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
117156978  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117162270  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
117157153  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117157154  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117164091  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
117164092  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
117153805  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
117165750  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
117155362  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
117163426  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
117156120  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
117159823  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
117155928  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
117154846  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117162297  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117164629  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117154885  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
117154098  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
117153509  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
117158298  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
117158048  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
117160079  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
117161376  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvan00010  Glycolysis / Gluconeogenesis
bvan00053  Ascorbate and aldarate metabolism
bvan00061  Fatty acid biosynthesis
bvan00062  Fatty acid elongation
bvan00071  Fatty acid degradation
bvan00190  Oxidative phosphorylation
bvan00220  Arginine biosynthesis
bvan00250  Alanine, aspartate and glutamate metabolism
bvan00280  Valine, leucine and isoleucine degradation
bvan00350  Tyrosine metabolism
bvan00470  D-Amino acid metabolism
bvan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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