KEGG   PATHWAY: bvc00020
Entry
bvc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas vesicularis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvc00020  Citrate cycle (TCA cycle)
bvc00020

Module
bvc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvc00020]
bvc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bvc00020]
bvc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvc00020]
bvc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bvc00020]
bvc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvc00020]
Other DBs
GO: 0006099
Organism
Brevundimonas vesicularis [GN:bvc]
Gene
CEP68_00225  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CEP68_06895  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CEP68_08150  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CEP68_09700  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CEP68_09705  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CEP68_05960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEP68_16230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEP68_07275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEP68_07945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEP68_09695  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CEP68_09690  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CEP68_01815  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CEP68_08195  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CEP68_08200  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CEP68_08185  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CEP68_08190  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CEP68_16300  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CEP68_06805  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CEP68_14625  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CEP68_16210  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CEP68_16215  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CEP68_16220  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvc00010  Glycolysis / Gluconeogenesis
bvc00053  Ascorbate and aldarate metabolism
bvc00061  Fatty acid biosynthesis
bvc00071  Fatty acid degradation
bvc00190  Oxidative phosphorylation
bvc00220  Arginine biosynthesis
bvc00250  Alanine, aspartate and glutamate metabolism
bvc00280  Valine, leucine and isoleucine degradation
bvc00350  Tyrosine metabolism
bvc00470  D-Amino acid metabolism
bvc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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