KEGG   PATHWAY: caba00030
Entry
caba00030                   Pathway                                
Name
Pentose phosphate pathway - Caballeronia sp. SBC2
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caba00030  Pentose phosphate pathway
caba00030

Module
caba_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:caba00030]
caba_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:caba00030]
caba_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:caba00030]
caba_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:caba00030]
caba_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:caba00030]
Other DBs
GO: 0006098
Organism
Caballeronia sp. SBC2 [GN:caba]
Gene
SBC2_18450  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SBC2_63300  zwf_2; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_65350  zwf2; Glucose-6-phosphate 1-dehydrogenase 2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_66860  zwf_3; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_72950  zwf_4; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_82160  zwf_5; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_11160  zwf_1; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SBC2_11170  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
SBC2_37760  pgl_3; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SBC2_12110  pgl_1; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SBC2_18000  pgl_2; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SBC2_68810  gnd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SBC2_16110  6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SBC2_31380  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SBC2_61560  aptA; Apulose-4-phosphate transketolase subunit A [KO:K00615] [EC:2.2.1.1]
SBC2_61570  aptB; Apulose-4-phosphate transketolase subunit B [KO:K00615] [EC:2.2.1.1]
SBC2_61610  tktA_2; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
SBC2_71890  tkt_2; Transketolase [KO:K00615] [EC:2.2.1.1]
SBC2_05140  tktA_1; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
SBC2_16100  tkt_1; Transketolase [KO:K00615] [EC:2.2.1.1]
SBC2_71880  tal_2; Transaldolase [KO:K00616] [EC:2.2.1.2]
SBC2_11960  tal_1; Transaldolase [KO:K00616] [EC:2.2.1.2]
SBC2_21600  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
SBC2_66320  xpkA; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SBC2_41080  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SBC2_41050  rbsK_2; Ribokinase [KO:K00852] [EC:2.7.1.15]
SBC2_49320  rbsK_3; Ribokinase [KO:K00852] [EC:2.7.1.15]
SBC2_27900  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SBC2_19270  phnN; Ribose 1,5-bisphosphate phosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
SBC2_03240  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SBC2_05330  edd; Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SBC2_05340  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SBC2_65210  gdhI_3; Glucose 1-dehydrogenase 1 [KO:K00034] [EC:1.1.1.47]
SBC2_80550  gdh_3; Glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
SBC2_56540  fdhL; Fructose dehydrogenase large subunit [KO:K19813] [EC:1.1.5.9]
SBC2_61990  gnl_1; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SBC2_68730  gnl_2; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SBC2_71760  gnl_3; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SBC2_80490  gnl_4; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SBC2_75690  Gluconate 2-dehydrogenase flavoprotein [KO:K06151] [EC:1.1.99.3]
SBC2_75720  Gluconate 2-dehydrogenase subunit 3 [KO:K06152] [EC:1.1.99.3]
SBC2_26130  ghrB_3; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SBC2_62050  ghrB_4; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SBC2_20210  ghrB_2; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SBC2_05360  gntK; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
SBC2_20230  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
SBC2_66810  dgaE; D-glucosaminate-6-phosphate ammonia lyase [KO:K17468] [EC:4.3.1.29]
SBC2_69490  fda; Fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
SBC2_10600  fbp_1; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
caba00010  Glycolysis / Gluconeogenesis
caba00040  Pentose and glucuronate interconversions
caba00052  Galactose metabolism
caba00230  Purine metabolism
caba00240  Pyrimidine metabolism
caba00340  Histidine metabolism
caba00630  Glyoxylate and dicarboxylate metabolism
caba00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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