KEGG   PATHWAY: cabi03082
Entry
cabi03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Chelonoidis abingdonii (Abingdon island giant tortoise)
Class
Genetic Information Processing; Chromosome
Pathway map
cabi03082  ATP-dependent chromatin remodeling
cabi03082

Organism
Chelonoidis abingdonii (Abingdon island giant tortoise) [GN:cabi]
Gene
116814881  BAZ1A; bromodomain adjacent to zinc finger domain protein 1A isoform X1 [KO:K11655]
116814950  ACTL6B; LOW QUALITY PROTEIN: actin-like protein 6B [KO:K11652]
116815030  [KO:K11251]
116815082  SRCAP; helicase SRCAP isoform X1 [KO:K11661] [EC:5.6.2.-]
116815273  YY1; transcriptional repressor protein YY1 [KO:K09201]
116815587  INO80C; INO80 complex subunit C [KO:K11667]
116815720  MORF4L1; mortality factor 4-like protein 1 isoform X1 [KO:K11339]
116816165  [KO:K25605]
116816301  [KO:K02326] [EC:2.7.7.7]
116816367  BRD9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
116816402  DMAP1; DNA methyltransferase 1-associated protein 1 isoform X1 [KO:K11324]
116816542  [KO:K25612]
116817420  [KO:K11251]
116817560  ACTB; actin, cytoplasmic 1 [KO:K05692]
116817577  MBD2; methyl-CpG-binding domain protein 2 [KO:K11590]
116817892  DPF3; zinc finger protein DPF3 isoform X1 [KO:K22198]
116818267  INO80; chromatin-remodeling ATPase INO80 [KO:K11665] [EC:5.6.2.-]
116818550  EPC2; enhancer of polycomb homolog 2 [KO:K11322]
116818728  [KO:K11658]
116818735  BCL7B; B-cell CLL/lymphoma 7 protein family member B isoform X1 [KO:K25605]
116819277  RSF1; remodeling and spacing factor 1 isoform X1 [KO:K11657]
116819343  TRRAP; transformation/transcription domain-associated protein isoform X1 [KO:K08874]
116819599  [KO:K05692]
116820570  PHF6; PHD finger protein 6 isoform X1 [KO:K23310]
116820790  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
116820837  [KO:K05692]
116821195  INO80E; INO80 complex subunit E [KO:K11669]
116821229  PHF10; PHD finger protein 10 isoform X1 [KO:K22197]
116821253  RBBP7; histone-binding protein RBBP7 [KO:K11659]
116821270  ACTR5; actin-related protein 5 [KO:K11672]
116821302  MTA3; metastasis-associated protein MTA3 [KO:K11660]
116822187  CDK2AP2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
116822333  [KO:K11251]
116824142  INO80D; INO80 complex subunit D [KO:K11668]
116824323  SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [KO:K11648]
116824608  HDAC2; histone deacetylase 2 isoform X1 [KO:K06067] [EC:3.5.1.98]
116824826  SMARCA4; transcription activator BRG1 isoform X1 [KO:K11647] [EC:5.6.2.-]
116825332  VPS72; vacuolar protein sorting-associated protein 72 homolog [KO:K11664]
116825908  SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 [KO:K11650]
116826430  ARID2; AT-rich interactive domain-containing protein 2 isoform X1 [KO:K11765]
116826491  [KO:K11251]
116826555  [KO:K11251]
116826556  [KO:K11251]
116826557  [KO:K11251]
116826558  [KO:K11251]
116826635  MTA1; metastasis-associated protein MTA1 isoform X1 [KO:K11660]
116826766  ACTL6A; actin-like protein 6A [KO:K11340]
116826977  BRD7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
116827273  [KO:K11251]
116827274  [KO:K11251]
116827279  [KO:K11251]
116827606  SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1 [KO:K11650]
116827720  BAZ2A; bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
116827743  SMARCC2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
116827818  MCRS1; LOW QUALITY PROTEIN: microspherule protein 1 [KO:K11674]
116828394  [KO:K11251]
116828830  SMARCC1; LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1 [KO:K11649]
116828998  ACTL8; actin-like protein 8 [KO:K05692]
116829130  RBBP4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
116829153  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
116829271  INO80B; INO80 complex subunit B [KO:K11666]
116829321  [KO:K11650]
116829406  SMARCA1; probable global transcription activator SNF2L1 [KO:K11727] [EC:5.6.2.-]
116829508  SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
116829642  ACTR6; actin-related protein 6 [KO:K11662]
116829890  SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
116830093  [KO:K25830]
116830694  [KO:K11251]
116831222  UCHL5; ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X1 [KO:K05610] [EC:3.4.19.12]
116832327  TFPT; TCF3 fusion partner [KO:K11670]
116832721  GATAD2B; transcriptional repressor p66-beta isoform X1 [KO:K23194]
116832849  [KO:K11251]
116832851  [KO:K11251]
116833081  ACTR8; actin-related protein 8 isoform X1 [KO:K11673]
116833169  BPTF; nucleosome-remodeling factor subunit BPTF isoform X1 [KO:K11728]
116833293  BRD8; bromodomain-containing protein 8 isoform X1 [KO:K11321]
116833296  [KO:K11321]
116833348  BICRAL; BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
116833526  [KO:K26167]
116833599  [KO:K11251]
116834244  ING3; inhibitor of growth protein 3 isoform X1 [KO:K11319]
116834275  MEAF6; chromatin modification-related protein MEAF6 [KO:K11344]
116834445  YEATS4; YEATS domain-containing protein 4 [KO:K11341]
116834747  [KO:K05692]
116834818  ACTG1; actin, cytoplasmic 2 [KO:K05692]
116834992  [KO:K11251]
116834993  [KO:K11251]
116834994  [KO:K11251]
116834996  [KO:K11251]
116835621  GATAD2A; transcriptional repressor p66-alpha isoform X1 [KO:K23194]
116835699  [KO:K11251]
116835811  MBD3; methyl-CpG-binding domain protein 3 isoform X1 [KO:K11591]
116835836  SS18; protein SSXT isoform X1 [KO:K15623]
116835866  EPC1; enhancer of polycomb homolog 1 isoform X1 [KO:K11322]
116836216  ARID1B; AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
116836228  MTA2; metastasis-associated protein MTA2 [KO:K11660]
116836264  [KO:K05692]
116836306  [KO:K05692]
116836376  [KO:K11251]
116836733  BCL7A; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
116836781  CDK2AP1; cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
116837065  [KO:K11251]
116837066  [KO:K11251]
116837149  [KO:K11251]
116837391  CHD4; chromodomain-helicase-DNA-binding protein 4 isoform X1 [KO:K11643] [EC:5.6.2.-]
116837456  SMARCA2; probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
116837697  MRGBP; MRG/MORF4L-binding protein [KO:K11343]
116837703  SS18L1; calcium-responsive transactivator [KO:K15623]
116837727  NFRKB; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
116837901  RUVBL1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
116838013  ARID1A; AT-rich interactive domain-containing protein 1A [KO:K11653]
116838197  CHRAC1; chromatin accessibility complex protein 1 [KO:K11656]
116838621  [KO:K11251]
116838784  KAT5; histone acetyltransferase KAT5 isoform X1 [KO:K11304] [EC:2.3.1.48]
116838788  DPF2; zinc finger protein ubi-d4 isoform X1 [KO:K13196]
116839424  [KO:K05692]
116839646  CHD3; LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3 [KO:K11642] [EC:5.6.2.-]
116839707  PBRM1; protein polybromo-1 isoform X1 [KO:K11757]
116839748  [KO:K11251]
116839791  [KO:K11320] [EC:5.6.2.-]
116839793  [KO:K11320] [EC:5.6.2.-]
116840055  RUVBL2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   

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