KEGG   PATHWAY: ccro00020
Entry
ccro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chondromyces crocatus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccro00020  Citrate cycle (TCA cycle)
ccro00020

Module
ccro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccro00020]
ccro_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccro00020]
ccro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccro00020]
ccro_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccro00020]
ccro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccro00020]
Other DBs
GO: 0006099
Organism
Chondromyces crocatus [GN:ccro]
Gene
CMC5_002780  [KO:K00161] [EC:1.2.4.1]
CMC5_002800  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMC5_004020  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CMC5_004030  [KO:K00239] [EC:1.3.5.1]
CMC5_004040  sdhA; succinate dehydrogenase [KO:K00241]
CMC5_005200  acnA; aconitate hydratase [KO:K27802]
CMC5_006070  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CMC5_011660  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CMC5_011690  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CMC5_011700  [KO:K01903] [EC:6.2.1.5]
CMC5_020920  aceK; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CMC5_021150  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CMC5_033110  sucA; 2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
CMC5_041290  [KO:K00627] [EC:2.3.1.12]
CMC5_041300  [KO:K00162] [EC:1.2.4.1]
CMC5_041310  [KO:K00161] [EC:1.2.4.1]
CMC5_042400  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CMC5_064710  [KO:K01647] [EC:2.3.3.1]
CMC5_064720  [KO:K01647] [EC:2.3.3.1]
CMC5_066680  [KO:K00161] [EC:1.2.4.1]
CMC5_066690  bkdA2; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CMC5_066700  [KO:K00627] [EC:2.3.1.12]
CMC5_069790  [KO:K00658] [EC:2.3.1.61]
CMC5_077510  sdhA; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CMC5_077520  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CMC5_077530  sdhA; succinate dehydrogenase [KO:K00241]
CMC5_079150  fumC; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccro00010  Glycolysis / Gluconeogenesis
ccro00053  Ascorbate and aldarate metabolism
ccro00061  Fatty acid biosynthesis
ccro00071  Fatty acid degradation
ccro00190  Oxidative phosphorylation
ccro00220  Arginine biosynthesis
ccro00250  Alanine, aspartate and glutamate metabolism
ccro00280  Valine, leucine and isoleucine degradation
ccro00350  Tyrosine metabolism
ccro00470  D-Amino acid metabolism
ccro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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