KEGG   PATHWAY: cda00020
Entry
cda00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium diphtheriae HC04
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cda00020  Citrate cycle (TCA cycle)
cda00020

Module
cda_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cda00020]
cda_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cda00020]
cda_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cda00020]
cda_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cda00020]
cda_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cda00020]
Other DBs
GO: 0006099
Organism
Corynebacterium diphtheriae HC04 [GN:cda]
Gene
CDHC04_0278  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDHC04_0280  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00241]
CDHC04_0281  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDHC04_0282  sdhC; succinate dehydrogenase reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDHC04_0538  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDHC04_0553  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDHC04_0713  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CDHC04_0852  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CDHC04_0916  sucA; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CDHC04_1194  acn; aconitate hydratase [KO:K27802]
CDHC04_1413  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CDHC04_1551  sucB; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CDHC04_1585  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CDHC04_1694  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDHC04_1791  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CDHC04_2094  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cda00010  Glycolysis / Gluconeogenesis
cda00053  Ascorbate and aldarate metabolism
cda00061  Fatty acid biosynthesis
cda00071  Fatty acid degradation
cda00190  Oxidative phosphorylation
cda00220  Arginine biosynthesis
cda00250  Alanine, aspartate and glutamate metabolism
cda00280  Valine, leucine and isoleucine degradation
cda00350  Tyrosine metabolism
cda00470  D-Amino acid metabolism
cda00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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