KEGG   PATHWAY: cel00020
Entry
cel00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caenorhabditis elegans (nematode)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cel00020  Citrate cycle (TCA cycle)
cel00020

Module
cel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cel00020]
cel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cel00020]
cel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cel00020]
cel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cel00020]
cel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cel00020]
Other DBs
GO: 0006099
Organism
Caenorhabditis elegans (nematode) [GN:cel]
Gene
CELE_B0365.1  acly-2; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
CELE_C03G5.1  sdha-1; Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CELE_C04C3.3  pdhb-1; Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
CELE_C05G5.4  sucl-1; Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CELE_C30F12.7  idhg-2; Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
CELE_C30H6.7  dlat-2; 2-oxoacid dehydrogenase acyltransferase catalytic domain-containing protein [KO:K00627] [EC:2.3.1.12]
CELE_C34B2.7  sdha-2; Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CELE_C34F6.8  idh-2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CELE_C37E2.1  idhb-1; putative isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
CELE_C50F7.4  sucg-1; Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CELE_D1005.1  acly-1; putative ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
CELE_D2023.2  pyc-1; Pyruvate carboxylase subunit B [KO:K01958] [EC:6.4.1.1]
CELE_F20H11.3  mdh-2; Malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
CELE_F23B12.5  dlat-1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
CELE_F23H11.3  sucl-2; Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CELE_F33A8.5  sdhd-1; Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
CELE_F35G12.2  idhg-1; Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
CELE_F42A8.2  sdhb-1; Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
CELE_F43G9.1  idha-1; putative isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
CELE_F46E10.10  mdh-1; Malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
CELE_F47B10.1  suca-1; Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CELE_F54H12.1  aco-2; putative aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CELE_F59B8.2  idh-1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CELE_H14A12.2  fum-1; putative fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
CELE_LLC1.3  dld-1; Dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
CELE_R11A5.4  pck-2; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CELE_T05H10.6  pdha-1; putative pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
CELE_T07C4.7  mev-1; Succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
CELE_T20G5.2  cts-1; putative citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CELE_T22B11.5  ogdh-1; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
CELE_W02F12.5  dlst-1; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
CELE_W05G11.6  pck-1; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CELE_ZK455.1  aco-1; Cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cel00010  Glycolysis / Gluconeogenesis
cel00053  Ascorbate and aldarate metabolism
cel00061  Fatty acid biosynthesis
cel00062  Fatty acid elongation
cel00071  Fatty acid degradation
cel00190  Oxidative phosphorylation
cel00220  Arginine biosynthesis
cel00250  Alanine, aspartate and glutamate metabolism
cel00280  Valine, leucine and isoleucine degradation
cel00350  Tyrosine metabolism
cel00470  D-Amino acid metabolism
cel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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