KEGG   PATHWAY: cfc00020
Entry
cfc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium flavescens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfc00020  Citrate cycle (TCA cycle)
cfc00020

Module
cfc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfc00020]
cfc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfc00020]
cfc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfc00020]
cfc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfc00020]
cfc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfc00020]
Other DBs
GO: 0006099
Organism
Corynebacterium flavescens [GN:cfc]
Gene
CFLV_03920  citrate synthase [KO:K01647] [EC:2.3.3.1]
CFLV_06490  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFLV_02770  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFLV_04900  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CFLV_10900  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFLV_01625  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFLV_10630  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CFLV_01640  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CFLV_01645  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CFLV_01635  succinate dehydrogenase [KO:K00241]
CFLV_04645  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CFLV_09305  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFLV_07665  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFLV_02900  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CFLV_11705  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CFLV_12485  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CFLV_08765  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CFLV_10905  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CFLV_08465  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfc00010  Glycolysis / Gluconeogenesis
cfc00061  Fatty acid biosynthesis
cfc00071  Fatty acid degradation
cfc00190  Oxidative phosphorylation
cfc00220  Arginine biosynthesis
cfc00250  Alanine, aspartate and glutamate metabolism
cfc00280  Valine, leucine and isoleucine degradation
cfc00350  Tyrosine metabolism
cfc00470  D-Amino acid metabolism
cfc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system