KEGG   PATHWAY: cgib00020
Entry
cgib00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Carassius gibelio (silver crucian carp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgib00020  Citrate cycle (TCA cycle)
cgib00020

Module
cgib_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cgib00020]
cgib_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgib00020]
cgib_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgib00020]
cgib_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgib00020]
cgib_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgib00020]
Other DBs
GO: 0006099
Organism
Carassius gibelio (silver crucian carp) [GN:cgib]
Gene
127945135  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
128011498  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127952794  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
127948362  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
128025671  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
127969122  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
128025185  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
128016441  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
127965502  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
127934204  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
127977167  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
128019842  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
127942081  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
127944808  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127947287  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
128014449  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
127986608  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
128011212  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
128011683  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127963276  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
127966220  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
127969793  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
128018332  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
127933208  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
127975807  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
127947448  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
128014534  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
127949154  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
128017340  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127968009  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127959315  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
128022431  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
128016175  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127979627  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
127935740  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
127944258  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127987558  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
128011999  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127951659  succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
127935063  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
127972917  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
128031586  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial [KO:K00237]
128029455  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
127969506  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
128025578  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
127975785  malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
127949004  malate dehydrogenase 1Aa, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
128020941  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
127966452  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
128021072  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127942139  pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
127961598  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
127985552  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
127946541  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
128016087  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
128013009  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
127946296  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
127957507  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
127957508  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
128011414  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
127942937  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127986950  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
127986951  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
127941921  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
128015019  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
127986426  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgib00010  Glycolysis / Gluconeogenesis
cgib00053  Ascorbate and aldarate metabolism
cgib00061  Fatty acid biosynthesis
cgib00062  Fatty acid elongation
cgib00071  Fatty acid degradation
cgib00190  Oxidative phosphorylation
cgib00220  Arginine biosynthesis
cgib00250  Alanine, aspartate and glutamate metabolism
cgib00280  Valine, leucine and isoleucine degradation
cgib00350  Tyrosine metabolism
cgib00470  D-Amino acid metabolism
cgib00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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