KEGG   PATHWAY: chra00020
Entry
chra00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium sp.
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chra00020  Citrate cycle (TCA cycle)
chra00020

Module
chra_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chra00020]
chra_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chra00020]
chra_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chra00020]
chra_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chra00020]
chra_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chra00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium sp. [GN:chra]
Gene
F7R58_00695  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F7R58_00700  [KO:K01676] [EC:4.2.1.2]
F7R58_00920  [KO:K27802]
F7R58_01155  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
F7R58_01720  [KO:K01647] [EC:2.3.3.1]
F7R58_03645  [KO:K00164] [EC:1.2.4.2]
F7R58_03650  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
F7R58_03940  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F7R58_04250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R58_05255  [KO:K00024] [EC:1.1.1.37]
F7R58_05475  [KO:K00031] [EC:1.1.1.42]
F7R58_05720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R58_06280  [KO:K00658] [EC:2.3.1.61]
F7R58_06700  [KO:K00627] [EC:2.3.1.12]
F7R58_06705  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
F7R58_09645  [KO:K00162] [EC:1.2.4.1]
F7R58_10420  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F7R58_10775  [KO:K00240] [EC:1.3.5.1]
F7R58_10780  [KO:K00239] [EC:1.3.5.1]
F7R58_10785  [KO:K00241]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chra00010  Glycolysis / Gluconeogenesis
chra00053  Ascorbate and aldarate metabolism
chra00061  Fatty acid biosynthesis
chra00071  Fatty acid degradation
chra00190  Oxidative phosphorylation
chra00220  Arginine biosynthesis
chra00250  Alanine, aspartate and glutamate metabolism
chra00280  Valine, leucine and isoleucine degradation
chra00350  Tyrosine metabolism
chra00470  D-Amino acid metabolism
chra00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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