KEGG   PATHWAY: chx00020
Entry
chx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Capra hircus (goat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chx00020  Citrate cycle (TCA cycle)
chx00020

Module
chx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chx00020]
chx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chx00020]
chx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chx00020]
chx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chx00020]
chx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chx00020]
Other DBs
GO: 0006099
Organism
Capra hircus (goat) [GN:chx]
Gene
100860881  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
102168710  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
102168734  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
102168742  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
102168803  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
102168943  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
102172823  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102173475  SUCLG1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102174799  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102176249  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102176387  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102176699  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102179922  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
102179952  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
102181480  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102181894  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
102181902  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
102182852  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
102182885  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102183107  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
102183195  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
102183291  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
102184057  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
102184953  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
102187468  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
102188964  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
102189176  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
102190002  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
102190495  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
102190648  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chx00010  Glycolysis / Gluconeogenesis
chx00053  Ascorbate and aldarate metabolism
chx00061  Fatty acid biosynthesis
chx00062  Fatty acid elongation
chx00071  Fatty acid degradation
chx00190  Oxidative phosphorylation
chx00220  Arginine biosynthesis
chx00250  Alanine, aspartate and glutamate metabolism
chx00280  Valine, leucine and isoleucine degradation
chx00350  Tyrosine metabolism
chx00470  D-Amino acid metabolism
chx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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