KEGG   PATHWAY: cmao00020
Entry
cmao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colossoma macropomum (tambaqui)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmao00020  Citrate cycle (TCA cycle)
cmao00020

Module
cmao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmao00020]
cmao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cmao00020]
cmao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmao00020]
cmao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmao00020]
cmao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmao00020]
Other DBs
GO: 0006099
Organism
Colossoma macropomum (tambaqui) [GN:cmao]
Gene
118797789  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
118799028  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b [KO:K00161] [EC:1.2.4.1]
118799269  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
118799387  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118799700  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
118800466  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
118801245  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
118801352  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
118803122  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
118803658  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
118805907  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
118807830  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118808615  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
118808869  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
118809059  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
118809138  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
118810456  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
118811678  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
118811721  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
118813104  ogdha; LOW QUALITY PROTEIN: oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) [KO:K00164] [EC:1.2.4.2]
118814924  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
118816626  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
118819814  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
118819850  pcxa; LOW QUALITY PROTEIN: pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
118819965  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
118821359  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
118822398  [KO:K00030] [EC:1.1.1.41]
118822718  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
118822758  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
118823172  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
118823412  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
118824600  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
118824640  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
118826304  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
118826642  aco1; LOW QUALITY PROTEIN: cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmao00010  Glycolysis / Gluconeogenesis
cmao00053  Ascorbate and aldarate metabolism
cmao00061  Fatty acid biosynthesis
cmao00062  Fatty acid elongation
cmao00071  Fatty acid degradation
cmao00190  Oxidative phosphorylation
cmao00220  Arginine biosynthesis
cmao00250  Alanine, aspartate and glutamate metabolism
cmao00280  Valine, leucine and isoleucine degradation
cmao00350  Tyrosine metabolism
cmao00470  D-Amino acid metabolism
cmao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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