KEGG   PATHWAY: cop00020
Entry
cop00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium pseudotuberculosis 31
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cop00020  Citrate cycle (TCA cycle)
cop00020

Module
cop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cop00020]
cop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cop00020]
cop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cop00020]
cop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cop00020]
cop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cop00020]
Other DBs
GO: 0006099
Organism
Corynebacterium pseudotuberculosis 31 [GN:cop]
Gene
CP31_03400  citrate synthase [KO:K01647] [EC:2.3.3.1]
CP31_05815  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CP31_02680  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP31_04380  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CP31_01510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP31_09065  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CP31_01525  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP31_01530  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP31_01520  succinate dehydrogenase [KO:K00241]
CP31_04070  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CP31_08345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CP31_06920  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CP31_02765  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CP31_10250  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CP31_07875  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP31_07630  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cop00010  Glycolysis / Gluconeogenesis
cop00053  Ascorbate and aldarate metabolism
cop00061  Fatty acid biosynthesis
cop00071  Fatty acid degradation
cop00190  Oxidative phosphorylation
cop00220  Arginine biosynthesis
cop00250  Alanine, aspartate and glutamate metabolism
cop00280  Valine, leucine and isoleucine degradation
cop00350  Tyrosine metabolism
cop00470  D-Amino acid metabolism
cop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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