KEGG   PATHWAY: cpip00020
Entry
cpip00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium piperi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpip00020  Citrate cycle (TCA cycle)
cpip00020

Module
cpip_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpip00020]
cpip_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpip00020]
cpip_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpip00020]
cpip_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpip00020]
cpip_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpip00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium piperi [GN:cpip]
Gene
CJF12_12015  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CJF12_04005  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CJF12_15610  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CJF12_15615  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CJF12_02050  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CJF12_02950  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CJF12_02955  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CJF12_03040  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
CJF12_01410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJF12_02725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJF12_06955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJF12_19190  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CJF12_17805  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CJF12_16825  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CJF12_19485  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CJF12_16830  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CJF12_19480  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CJF12_16820  succinate dehydrogenase [KO:K00241]
CJF12_19490  succinate dehydrogenase [KO:K00241]
CJF12_15250  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CJF12_15245  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CJF12_19515  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJF12_10320  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CJF12_12605  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CJF12_05490  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CJF12_18610  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CJF12_05485  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpip00010  Glycolysis / Gluconeogenesis
cpip00053  Ascorbate and aldarate metabolism
cpip00061  Fatty acid biosynthesis
cpip00071  Fatty acid degradation
cpip00190  Oxidative phosphorylation
cpip00220  Arginine biosynthesis
cpip00250  Alanine, aspartate and glutamate metabolism
cpip00280  Valine, leucine and isoleucine degradation
cpip00350  Tyrosine metabolism
cpip00470  D-Amino acid metabolism
cpip00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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