KEGG   PATHWAY: csk00030
Entry
csk00030                    Pathway                                
Name
Pentose phosphate pathway - Cronobacter sakazakii ES15
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csk00030  Pentose phosphate pathway
csk00030

Module
csk_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:csk00030]
csk_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:csk00030]
csk_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:csk00030]
csk_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:csk00030]
csk_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:csk00030]
csk_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:csk00030]
csk_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:csk00030]
Other DBs
GO: 0006098
Organism
Cronobacter sakazakii ES15 [GN:csk]
Gene
ES15_0011  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
ES15_0100  pfk1; 6-phosphofructokinase 1 [KO:K00850] [EC:2.7.1.11]
ES15_0144  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
ES15_0146  kdgK1; putative 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ES15_0170  kdgK2; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ES15_0234  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
ES15_0284  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
ES15_0309  prsA1; putative ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
ES15_0391  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
ES15_0537  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
ES15_0680  tktA1; transketolase [KO:K00615] [EC:2.2.1.1]
ES15_0684  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
ES15_0689  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
ES15_1057  tktA2; transketolase [KO:K00615] [EC:2.2.1.1]
ES15_1058  talA; transaldolase A [KO:K00616] [EC:2.2.1.2]
ES15_1376  fbaB; fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
ES15_1428  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ES15_1602  zwf; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ES15_1603  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
ES15_1604  eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ES15_1725  prsA2; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
ES15_2285  pfk2; 6-phosphofructokinase 2 [KO:K16370] [EC:2.7.1.11]
ES15_2670  pgl; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
ES15_2730  [KO:K01835] [EC:5.4.2.2]
ES15_3195  gcd; quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
ES15_3308  [KO:K00616] [EC:2.2.1.2]
ES15_3344  [KO:K01839] [EC:5.4.2.7]
ES15_3346  [KO:K01619] [EC:4.1.2.4]
ES15_3793  glpX; fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
csk00010  Glycolysis / Gluconeogenesis
csk00040  Pentose and glucuronate interconversions
csk00052  Galactose metabolism
csk00230  Purine metabolism
csk00240  Pyrimidine metabolism
csk00340  Histidine metabolism
csk00630  Glyoxylate and dicarboxylate metabolism
csk00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system