KEGG   PATHWAY: cxe00020
Entry
cxe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium xerosis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cxe00020  Citrate cycle (TCA cycle)
cxe00020

Module
cxe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cxe00020]
cxe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cxe00020]
cxe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cxe00020]
cxe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cxe00020]
cxe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cxe00020]
Other DBs
GO: 0006099
Organism
Corynebacterium xerosis [GN:cxe]
Gene
FOB82_03255  citrate synthase [KO:K01647] [EC:2.3.3.1]
FOB82_12200  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FOB82_07765  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOB82_09505  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FOB82_06750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB82_02320  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
FOB82_10180  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
FOB82_06795  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FOB82_06800  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FOB82_06790  succinate dehydrogenase [KO:K00241]
FOB82_01820  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
FOB82_08755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FOB82_10950  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FOB82_04815  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FOB82_01210  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FOB82_00960  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cxe00010  Glycolysis / Gluconeogenesis
cxe00061  Fatty acid biosynthesis
cxe00071  Fatty acid degradation
cxe00190  Oxidative phosphorylation
cxe00220  Arginine biosynthesis
cxe00250  Alanine, aspartate and glutamate metabolism
cxe00280  Valine, leucine and isoleucine degradation
cxe00350  Tyrosine metabolism
cxe00470  D-Amino acid metabolism
cxe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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