KEGG   PATHWAY: ddz00010
Entry
ddz00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Candidatus Desulfobacillus denitrificans
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ddz00010  Glycolysis / Gluconeogenesis
ddz00010

Module
ddz_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ddz00010]
ddz_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ddz00010]
ddz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ddz00010]
ddz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ddz00010]
Other DBs
GO: 0006096 0006094
Organism
Candidatus Desulfobacillus denitrificans [GN:ddz]
Gene
DSYM_04450  glucokinase [KO:K00845] [EC:2.7.1.2]
DSYM_10350  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DSYM_10110  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
DSYM_05320  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
DSYM_04380  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
DSYM_24980  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
DSYM_20560  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
DSYM_24950  type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
DSYM_24960  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
DSYM_04650  phosphoglyceromutase, partial [KO:K01834] [EC:5.4.2.11]
DSYM_04550  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
DSYM_12280  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
DSYM_17640  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
DSYM_24970  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
DSYM_05680  pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
DSYM_15450  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
DSYM_27070  pyruvate, phosphate dikinase [KO:K01007] [EC:2.7.9.2]
DSYM_24750  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DSYM_00150  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DSYM_00140  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DSYM_24760  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
DSYM_00130  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DSYM_17950  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSYM_24780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSYM_25950  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSYM_27690  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DSYM_27700  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
DSYM_27680  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
DSYM_15130  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DSYM_12570  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSYM_19080  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSYM_12580  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSYM_19070  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSYM_13770  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
DSYM_08400  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
DSYM_13300  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DSYM_00160  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DSYM_08790  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
DSYM_07080  phosphoenolpyruvate carboxykinase, GTP-utilizing [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ddz00020  Citrate cycle (TCA cycle)
ddz00030  Pentose phosphate pathway
ddz00500  Starch and sucrose metabolism
ddz00620  Pyruvate metabolism
ddz00640  Propanoate metabolism
ddz00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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