KEGG   PATHWAY: dsp03030
Entry
dsp03030                    Pathway                                
Name
DNA replication - Dipodomys spectabilis (banner-tailed kangaroo rat)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
dsp03030  DNA replication
dsp03030

Organism
Dipodomys spectabilis (banner-tailed kangaroo rat) [GN:dsp]
Gene
122096667  Pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
122098708  Rfc4; replication factor C subunit 4 [KO:K10755]
122099005  Rfc5; replication factor C subunit 5 [KO:K10756]
122099619  Pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
122100245  Rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
122101581  Mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
122102516  Mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
122103277  Rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
122104919  Rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
122104939  Pola2; DNA polymerase alpha subunit B [KO:K02321]
122105291  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
122105304  Pold4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
122105900  Ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
122106499  Pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
122106646  Rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
122108828  Rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
122110812  Mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
122112588  Rfc3; replication factor C subunit 3 [KO:K10756]
122112629  [KO:K10741]
122112736  Rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
122113191  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
122113579  Mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
122114675  Pold3; DNA polymerase delta subunit 3 [KO:K03504]
122114810  Rfc2; replication factor C subunit 2 [KO:K10755]
122115310  Rpa2; replication protein A 32 kDa subunit [KO:K10739]
122119229  Mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
122120257  Pcna; proliferating cell nuclear antigen [KO:K04802]
122121198  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
122121836  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
122122380  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
122122502  [KO:K10739]
122122638  Prim2; DNA primase large subunit [KO:K02685]
122124121  Prim1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
122125160  Pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
122125610  Pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
122125798  Lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
122128083  Pold2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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