KEGG   PATHWAY: dsr00020
Entry
dsr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila serrata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dsr00020  Citrate cycle (TCA cycle)
dsr00020

Module
dsr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dsr00020]
dsr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dsr00020]
dsr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dsr00020]
dsr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dsr00020]
dsr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dsr00020]
Other DBs
GO: 0006099
Organism
Drosophila serrata [GN:dsr]
Gene
110176608  LOW QUALITY PROTEIN: probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
110179502  probable citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110178519  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110187447  LOW QUALITY PROTEIN: probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110191360  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
110187758  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110177426  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
110189030  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
110190549  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
110178158  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
110180147  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110191167  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
110187008  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110190429  proteoglycan 4 [KO:K00030] [EC:1.1.1.41]
110179761  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110190379  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
110178755  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
110191331  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
110177416  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110178959  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110182446  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110183716  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110176182  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110191919  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110176253  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110189774  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
110179100  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
110187908  uncharacterized protein LOC110187908 [KO:K00236]
110188140  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
110184611  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
110183493  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
110183494  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
110177643  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
110179824  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
110183273  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
110177515  uncharacterized protein LOC110177515 [KO:K00026] [EC:1.1.1.37]
110177516  uncharacterized protein LOC110177516 [KO:K00026] [EC:1.1.1.37]
110187681  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110189251  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
110189506  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
110189417  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
110180544  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
110189715  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
110187001  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
110182680  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dsr00010  Glycolysis / Gluconeogenesis
dsr00053  Ascorbate and aldarate metabolism
dsr00061  Fatty acid biosynthesis
dsr00062  Fatty acid elongation
dsr00071  Fatty acid degradation
dsr00190  Oxidative phosphorylation
dsr00220  Arginine biosynthesis
dsr00250  Alanine, aspartate and glutamate metabolism
dsr00280  Valine, leucine and isoleucine degradation
dsr00350  Tyrosine metabolism
dsr00470  D-Amino acid metabolism
dsr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system