KEGG   PATHWAY: eao00020
Entry
eao00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia anophelis NUHP1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eao00020  Citrate cycle (TCA cycle)
eao00020

Module
eao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eao00020]
eao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eao00020]
eao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eao00020]
eao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eao00020]
eao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eao00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia anophelis NUHP1 [GN:eao]
Gene
BD94_3630  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BD94_3848  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BD94_1843  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BD94_2661  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BD94_1964  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BD94_2464  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BD94_1965  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BD94_2540  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BD94_0902  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BD94_2409  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase / Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BD94_2851  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BD94_0684  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BD94_0317  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BD94_0883  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BD94_0318  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BD94_0884  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BD94_0316  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
BD94_0882  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
BD94_3911  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
BD94_3912  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BD94_0778  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BD94_1186  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BD94_3767  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BD94_2013  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BD94_0438  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BD94_2014  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eao00010  Glycolysis / Gluconeogenesis
eao00053  Ascorbate and aldarate metabolism
eao00061  Fatty acid biosynthesis
eao00062  Fatty acid elongation
eao00071  Fatty acid degradation
eao00190  Oxidative phosphorylation
eao00220  Arginine biosynthesis
eao00250  Alanine, aspartate and glutamate metabolism
eao00280  Valine, leucine and isoleucine degradation
eao00350  Tyrosine metabolism
eao00470  D-Amino acid metabolism
eao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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