KEGG   PATHWAY: ebe00040
Entry
ebe00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Escherichia coli BL21(DE3)
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebe00040  Pentose and glucuronate interconversions
ebe00040

Module
ebe_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ebe00040]
ebe_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ebe00040]
Organism
Escherichia coli BL21(DE3) [GN:ebe]
Gene
B21_00700  ybhC; outer membrane lipoprotein [KO:K01051] [EC:3.1.1.11]
B21_02654  kduI; predicted 5-keto 4-deoxyuronate isomerase [KO:K01815] [EC:5.3.1.17]
B21_02653  kduD_1; 2-deoxy-D-gluconate 3-dehydrogenase, N-ter fragment [KO:K00065] [EC:1.1.1.127]
B21_02912  uxaC; D-galacturonate isomerase / D-glucuronate isomerase [KO:K01812] [EC:5.3.1.12]
B21_01489  uxaB; altronate oxidoreductase [KO:K00041] [EC:1.1.1.58]
B21_02911  uxaA; D-altronate dehydratase [KO:K01685] [EC:4.2.1.7]
B21_04153  uxuA; D-mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
B21_01540  rspA; mannonate/altronate dehydratase [KO:K08323] [EC:4.2.1.8]
B21_04154  uxuB; UxuB [KO:K00040] [EC:1.1.1.57]
B21_01512  ydfI; predicted mannonate dehydrogenase [KO:K00040] [EC:1.1.1.57]
B21_01539  rspB; predicted oxidoreductase, Zn-dependent and NAD(P)-binding [KO:K08322] [EC:1.1.1.380]
B21_01576  uidA; beta-D-glucuronidase [KO:K01195] [EC:3.2.1.31]
B21_01916  ugd; UDP-glucose 6-dehydrogenase [KO:K00012] [EC:1.1.1.22]
B21_01222  galU; galU, subunit of glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
B21_01937  galF; predicted subunit with GalU, subunit of glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
B21_03378  yiaK; 2,3-diketo-L-gulonate reductase monomer, subunit of 2,3-diketo-L-gulonate reductase [KO:K08092] [EC:1.1.1.130]
B21_03383  lyxK; L-xylulose kinase [KO:K00880] [EC:2.7.1.53]
B21_04025  ulaD; 3-keto-L-gulonate 6-phosphate decarboxylase [KO:K03078] [EC:4.1.1.85]
B21_03384  sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase [KO:K03078] [EC:4.1.1.85]
B21_04026  ulaE; L-xylulose 5-phosphate 3-epimerase [KO:K03079] [EC:5.1.3.22]
B21_03385  sgbU; predicted L-xylulose 5-phosphate 3-epimerase [KO:K03079] [EC:5.1.3.22]
B21_00062  araD; L-ribulose 5-phosphate 4-epimerase monomer, subunit of L-ribulose 5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
B21_04027  ulaF; L-ribulose 5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
B21_03386  sgbE; SgbE [KO:K03077] [EC:5.1.3.4]
B21_03190  rpe; ribulose phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
B21_00063  araA; L-arabinose isomerase monomer, subunit of L-arabinose isomerase [KO:K01804] [EC:5.3.1.4]
B21_00064  araB; L-ribulokinase monomer, subunit of L-ribulokinase [KO:K00853] [EC:2.7.1.16]
B21_03367  xylB; xylulokinase [KO:K00854] [EC:2.7.1.17]
B21_03368  xylA; xylose isomerase [KO:K01805] [EC:5.3.1.5]
B21_03739  rhaB; L-rhamnulose kinase [KO:K00848] [EC:2.7.1.5]
B21_03737  rhaD; rhamnulose-1-phosphate aldolase monomer, subunit of rhamnulose-1-phosphate aldolase [KO:K01629] [EC:4.1.2.19]
B21_01731  ydjJ; predicted oxidoreductase, Zn-dependent and NAD(P)-binding [KO:K00008] [EC:1.1.1.14]
B21_02610  ybl118; ybl118 [KO:K00875] [EC:2.7.1.47]
B21_02614  fucI; L-fucose isomerase [KO:K01818] [EC:5.3.1.25 5.3.1.3]
B21_02615  fucK; L-fuculokinase [KO:K00879] [EC:2.7.1.51]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
ebe00010  Glycolysis / Gluconeogenesis
ebe00020  Citrate cycle (TCA cycle)
ebe00030  Pentose phosphate pathway
ebe00052  Galactose metabolism
ebe00053  Ascorbate and aldarate metabolism
ebe00500  Starch and sucrose metabolism
ebe00520  Amino sugar and nucleotide sugar metabolism
ebe00561  Glycerolipid metabolism
ebe00562  Inositol phosphate metabolism
ebe00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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