KEGG   PATHWAY: ebe00030
Entry
ebe00030                    Pathway                                
Name
Pentose phosphate pathway - Escherichia coli BL21(DE3)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebe00030  Pentose phosphate pathway
ebe00030

Module
ebe_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ebe00030]
ebe_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ebe00030]
ebe_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ebe00030]
ebe_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ebe00030]
Other DBs
GO: 0006098
Organism
Escherichia coli BL21(DE3) [GN:ebe]
Gene
B21_03857  pgi; phosphoglucose isomerase [KO:K01810] [EC:5.3.1.9]
B21_01811  zwf; glucose 6-phosphate-1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
B21_01917  gnd; 6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
B21_03190  rpe; ribulose phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
B21_02728  tktA; transketolase I [KO:K00615] [EC:2.2.1.1]
B21_02318  tktB; transketolase II [KO:K00615] [EC:2.2.1.1]
B21_00008  talB; transaldolase B [KO:K00616] [EC:2.2.1.2]
B21_02317  talA; transaldolase A [KO:K00616] [EC:2.2.1.2]
B21_02708  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
B21_03922  rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer, subunit of allose-6-phosphate isomerase / ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
B21_04223  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
B21_03583  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
B21_03184  yhfW; predicted mutase [KO:K01839] [EC:5.4.2.7]
B21_04225  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
B21_00636  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
B21_03926  phnN; ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
B21_01192  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
B21_01810  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
B21_01809  eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B21_00122  gcd; glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
B21_03354  ghrB; 2-ketoaldonate reductase / glyoxylate reductase B / glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
B21_03241  gntK; D-gluconate kinase, thermostable [KO:K00851] [EC:2.7.1.12]
B21_04098  idnK; D-gluconate kinase, thermosensitive [KO:K00851] [EC:2.7.1.12]
B21_03327  kdgK; 2-keto-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
B21_01989  fbaB; fructose bisphosphate aldolase monomer, subunit of fructose bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
B21_02719  fbaA; fructose bisphosphate aldolase monomer, subunit of fructose bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
B21_04064  fbp; fructose-1,6-bisphosphatase monomer, subunit of fructose-1,6-bisphosphatase I [KO:K03841] [EC:3.1.3.11]
B21_03759  glpX; fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
B21_02724  yggF; fructose-1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
B21_03750  pfkA; 6-phosphofructokinase-1 monomer, subunit of 6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
B21_01680  pfkB; 6-phosphofructokinase-2 monomer, subunit of 6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ebe00010  Glycolysis / Gluconeogenesis
ebe00040  Pentose and glucuronate interconversions
ebe00052  Galactose metabolism
ebe00230  Purine metabolism
ebe00240  Pyrimidine metabolism
ebe00340  Histidine metabolism
ebe00630  Glyoxylate and dicarboxylate metabolism
ebe00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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