KEGG   PATHWAY: ebe00470
Entry
ebe00470                    Pathway                                
Name
D-Amino acid metabolism - Escherichia coli BL21(DE3)
Class
Metabolism; Metabolism of other amino acids
Pathway map
ebe00470  D-Amino acid metabolism
ebe00470

Other DBs
GO: 0046416
Organism
Escherichia coli BL21(DE3) [GN:ebe]
Gene
B21_01175  dadX; alanine racemase 2, PLP-binding [KO:K01775] [EC:5.1.1.1]
B21_03885  alr; alanine racemase 1, PLP-binding, biosynthetic [KO:K01775] [EC:5.1.1.1]
B21_00092  ddlB; D-alanine-D-alanine ligase B [KO:K01921] [EC:6.3.2.4]
B21_00332  ddlA; D-alanine-D-alanine ligase A [KO:K01921] [EC:6.3.2.4]
B21_02649  ygeA; predicted racemase [KO:K25316] [EC:5.1.1.10]
B21_00441  ybaS; glutaminase [KO:K01425] [EC:3.5.1.2]
B21_01492  yneH; glutaminase [KO:K01425] [EC:3.5.1.2]
B21_03801  murI; glutamate racemase [KO:K01776] [EC:5.1.1.3]
B21_00088  murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
B21_01313  ycjG; L-Ala-D/L-Glu epimerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
B21_02237  dsdA; D-serine deaminase [KO:K01753] [EC:4.3.1.18]
B21_03634  dapF; diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
B21_02647  lysA; diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
B21_01174  dadA; D-amino acid dehydrogenase, small subunit, subunit of D-amino acid dehydrogenase [KO:K00285] [EC:1.4.5.1]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
ebe00010  Glycolysis / Gluconeogenesis
ebe00020  Citrate cycle (TCA cycle)
ebe00250  Alanine, aspartate and glutamate metabolism
ebe00260  Glycine, serine and threonine metabolism
ebe00270  Cysteine and methionine metabolism
ebe00300  Lysine biosynthesis
ebe00310  Lysine degradation
ebe00330  Arginine and proline metabolism
ebe00340  Histidine metabolism
ebe00360  Phenylalanine metabolism
ebe00550  Peptidoglycan biosynthesis
ebe00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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