KEGG   PATHWAY: echi00020
Entry
echi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Echinicola soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
echi00020  Citrate cycle (TCA cycle)
echi00020

Module
echi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:echi00020]
echi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:echi00020]
echi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:echi00020]
echi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:echi00020]
echi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:echi00020]
Other DBs
GO: 0006099
Organism
Echinicola soli [GN:echi]
Gene
FKX85_14435  citrate synthase [KO:K01647] [EC:2.3.3.1]
FKX85_18950  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FKX85_12115  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FKX85_08960  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FKX85_19065  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FKX85_03495  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FKX85_03490  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FKX85_11665  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FKX85_03480  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKX85_21025  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKX85_00075  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FKX85_13755  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FKX85_13255  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FKX85_13260  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FKX85_13250  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FKX85_06395  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FKX85_09870  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FKX85_13985  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FKX85_04280  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FKX85_17985  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FKX85_18255  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
echi00010  Glycolysis / Gluconeogenesis
echi00053  Ascorbate and aldarate metabolism
echi00061  Fatty acid biosynthesis
echi00071  Fatty acid degradation
echi00190  Oxidative phosphorylation
echi00220  Arginine biosynthesis
echi00250  Alanine, aspartate and glutamate metabolism
echi00280  Valine, leucine and isoleucine degradation
echi00350  Tyrosine metabolism
echi00470  D-Amino acid metabolism
echi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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