KEGG   PATHWAY: eee00020
Entry
eee00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Electrophorus electricus (electric eel)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eee00020  Citrate cycle (TCA cycle)
eee00020

Module
eee_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eee00020]
eee_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eee00020]
eee_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eee00020]
eee_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eee00020]
eee_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eee00020]
Other DBs
GO: 0006099
Organism
Electrophorus electricus (electric eel) [GN:eee]
Gene
113567506  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
113570187  pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
113573167  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
113573494  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
113573786  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
113573975  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
113574583  [KO:K01596] [EC:4.1.1.32]
113574872  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
113575448  [KO:K00030] [EC:1.1.1.41]
113576348  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113576419  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
113577332  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
113577844  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
113579602  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
113579677  [KO:K00025] [EC:1.1.1.37]
113580601  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
113580749  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113581390  [KO:K00030] [EC:1.1.1.41]
113581553  [KO:K01648] [EC:2.3.3.8]
113582184  [KO:K00025] [EC:1.1.1.37]
113582781  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
113583610  ogdh; LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
113584051  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
113584737  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
113584853  [KO:K01681] [EC:4.2.1.3]
113585928  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
113586026  [KO:K01958] [EC:6.4.1.1]
113586114  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
113587720  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113588028  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
113588965  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
113590239  [KO:K00164] [EC:1.2.4.2]
113591252  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
113592331  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eee00010  Glycolysis / Gluconeogenesis
eee00053  Ascorbate and aldarate metabolism
eee00061  Fatty acid biosynthesis
eee00062  Fatty acid elongation
eee00071  Fatty acid degradation
eee00190  Oxidative phosphorylation
eee00220  Arginine biosynthesis
eee00250  Alanine, aspartate and glutamate metabolism
eee00280  Valine, leucine and isoleucine degradation
eee00350  Tyrosine metabolism
eee00470  D-Amino acid metabolism
eee00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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