KEGG   PATHWAY: efv00020
Entry
efv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Qipengyuania flava
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
efv00020  Citrate cycle (TCA cycle)
efv00020

Module
efv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:efv00020]
efv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:efv00020]
efv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:efv00020]
efv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:efv00020]
efv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:efv00020]
Other DBs
GO: 0006099
Organism
Qipengyuania flava [GN:efv]
Gene
CHH26_07915  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CHH26_14970  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CHH26_06725  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CHH26_06465  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CHH26_06460  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CHH26_08255  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH26_06455  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH26_07455  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CHH26_07465  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CHH26_06470  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CHH26_01440  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CHH26_07370  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CHH26_07695  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CHH26_07360  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CHH26_07365  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CHH26_14675  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CHH26_06480  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHH26_11970  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CHH26_08085  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CHH26_08090  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CHH26_08270  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
efv00010  Glycolysis / Gluconeogenesis
efv00053  Ascorbate and aldarate metabolism
efv00061  Fatty acid biosynthesis
efv00071  Fatty acid degradation
efv00190  Oxidative phosphorylation
efv00220  Arginine biosynthesis
efv00250  Alanine, aspartate and glutamate metabolism
efv00280  Valine, leucine and isoleucine degradation
efv00350  Tyrosine metabolism
efv00470  D-Amino acid metabolism
efv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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