KEGG   PATHWAY: elc00030
Entry
elc00030                    Pathway                                
Name
Pentose phosphate pathway - Escherichia coli clone D i14
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elc00030  Pentose phosphate pathway
elc00030

Module
elc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:elc00030]
elc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:elc00030]
elc_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:elc00030]
elc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:elc00030]
elc_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:elc00030]
elc_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:elc00030]
elc_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:elc00030]
Other DBs
GO: 0006098
Organism
Escherichia coli clone D i14 [GN:elc]
Gene
i14_4580  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
i14_2081  zwf; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
i14_0811  ybhE; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
i14_2356  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
i14_3828  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
i14_3239  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
i14_4354  transketolase [KO:K00615] [EC:2.2.1.1]
i14_2787  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
i14_0008  talB; transaldolase B [KO:K00616] [EC:2.2.1.2]
i14_2786  talA; transaldolase A [KO:K00616] [EC:2.2.1.2]
i14_3215  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
i14_4679  rpiB; ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
i14_4352  hypothetical protein [KO:K08094] [EC:5.3.1.27]
i14_4978  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
i14_4271  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
i14_0319  putative ribokinase [KO:K00852] [EC:2.7.1.15]
i14_3822  yhfW; putative mutase [KO:K01839] [EC:5.4.2.7]
i14_4980  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
i14_0744  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
i14_4683  phnN; ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
i14_1495  prsA; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
i14_2080  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
i14_2079  eda; keto-hydroxyglutarate-aldolase/2-keto-4-hydroxyglutarate aldolase decarboxylase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
i14_0140  gcd; glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
i14_4039  yiaE; 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
i14_3896  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
i14_4872  idnK; D-gluconate kinase [KO:K00851] [EC:2.7.1.12]
i14_4007  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
i14_2423  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
i14_4145  hypothetical protein [KO:K01624] [EC:4.1.2.13]
i14_4146  putative aldolase [KO:K01624] [EC:4.1.2.13]
i14_3224  fba; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
i14_4832  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
i14_4470  glpX; fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
i14_4461  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
i14_1943  pfkB; 6-phosphofructokinase 2 [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
elc00010  Glycolysis / Gluconeogenesis
elc00040  Pentose and glucuronate interconversions
elc00052  Galactose metabolism
elc00230  Purine metabolism
elc00240  Pyrimidine metabolism
elc00340  Histidine metabolism
elc00630  Glyoxylate and dicarboxylate metabolism
elc00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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