KEGG   PATHWAY: els00020
Entry
els00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Esox lucius (northern pike)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
els00020  Citrate cycle (TCA cycle)
els00020

Module
els_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:els00020]
els_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:els00020]
els_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:els00020]
els_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:els00020]
els_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:els00020]
Other DBs
GO: 0006099
Organism
Esox lucius (northern pike) [GN:els]
Gene
105008169  [KO:K00030] [EC:1.1.1.41]
105008309  [KO:K00025] [EC:1.1.1.37]
105009475  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
105011098  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105012561  [KO:K00234] [EC:1.3.5.1]
105013338  acly; ATP-citrate synthase isoform X2 [KO:K01648] [EC:2.3.3.8]
105013356  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
105013525  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
105014042  [KO:K00164] [EC:1.2.4.2]
105015304  [KO:K00164] [EC:1.2.4.2]
105015704  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
105016265  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105016316  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105016545  [KO:K00234] [EC:1.3.5.1]
105016647  [KO:K00031] [EC:1.1.1.42]
105016769  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
105017094  [KO:K01647] [EC:2.3.3.1]
105017105  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105017300  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105018623  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105019502  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
105021109  [KO:K00030] [EC:1.1.1.41]
105021528  mdh1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
105021994  [KO:K00161] [EC:1.2.4.1]
105022122  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
105022300  [KO:K01647] [EC:2.3.3.1]
105024040  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105024551  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
105025085  [KO:K01681] [EC:4.2.1.3]
105025288  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
105025672  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
105025784  [KO:K01681] [EC:4.2.1.3]
105027539  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105027682  [KO:K00161] [EC:1.2.4.1]
105028067  [KO:K01958] [EC:6.4.1.1]
105030571  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
105030915  [KO:K01958] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
els00010  Glycolysis / Gluconeogenesis
els00053  Ascorbate and aldarate metabolism
els00061  Fatty acid biosynthesis
els00062  Fatty acid elongation
els00071  Fatty acid degradation
els00190  Oxidative phosphorylation
els00220  Arginine biosynthesis
els00250  Alanine, aspartate and glutamate metabolism
els00280  Valine, leucine and isoleucine degradation
els00350  Tyrosine metabolism
els00470  D-Amino acid metabolism
els00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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