KEGG   PATHWAY: elz00020
Entry
elz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia sp. 2-6
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elz00020  Citrate cycle (TCA cycle)
elz00020

Module
elz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elz00020]
elz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elz00020]
elz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elz00020]
elz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elz00020]
elz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elz00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia sp. 2-6 [GN:elz]
Gene
FCS00_12680  citrate synthase [KO:K01647] [EC:2.3.3.1]
FCS00_01855  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FCS00_11730  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FCS00_17835  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FCS00_01240  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FCS00_18865  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FCS00_01235  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FCS00_19145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCS00_06615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCS00_18445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCS00_16810  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FCS00_07875  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FCS00_09125  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCS00_06735  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCS00_09120  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCS00_06730  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCS00_09130  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FCS00_06740  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FCS00_11435  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FCS00_11430  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FCS00_07340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCS00_04455  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FCS00_12270  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FCS00_01010  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FCS00_08505  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FCS00_01005  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elz00010  Glycolysis / Gluconeogenesis
elz00053  Ascorbate and aldarate metabolism
elz00061  Fatty acid biosynthesis
elz00062  Fatty acid elongation
elz00071  Fatty acid degradation
elz00190  Oxidative phosphorylation
elz00220  Arginine biosynthesis
elz00250  Alanine, aspartate and glutamate metabolism
elz00280  Valine, leucine and isoleucine degradation
elz00350  Tyrosine metabolism
elz00470  D-Amino acid metabolism
elz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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