KEGG   PATHWAY: erk00020
Entry
erk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erythrobacter sp. KY5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
erk00020  Citrate cycle (TCA cycle)
erk00020

Module
erk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:erk00020]
erk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:erk00020]
erk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:erk00020]
erk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:erk00020]
erk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:erk00020]
Other DBs
GO: 0006099
Organism
Erythrobacter sp. KY5 [GN:erk]
Gene
CD351_10450  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CD351_15480  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CD351_11600  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CD351_11860  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CD351_11865  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CD351_10100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CD351_11880  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CD351_11855  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CD351_01615  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CD351_11025  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CD351_10675  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CD351_11035  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CD351_11030  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CD351_02190  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CD351_11845  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CD351_06605  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CD351_10305  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CD351_10300  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CD351_10085  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
erk00010  Glycolysis / Gluconeogenesis
erk00053  Ascorbate and aldarate metabolism
erk00061  Fatty acid biosynthesis
erk00071  Fatty acid degradation
erk00190  Oxidative phosphorylation
erk00220  Arginine biosynthesis
erk00250  Alanine, aspartate and glutamate metabolism
erk00280  Valine, leucine and isoleucine degradation
erk00350  Tyrosine metabolism
erk00470  D-Amino acid metabolism
erk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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