KEGG   PATHWAY: fex00020
Entry
fex00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Formica exsecta (narrow-headed ant)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fex00020  Citrate cycle (TCA cycle)
fex00020

Module
fex_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fex00020]
fex_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fex00020]
fex_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fex00020]
fex_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fex00020]
Other DBs
GO: 0006099
Organism
Formica exsecta (narrow-headed ant) [GN:fex]
Gene
115237483  LOW QUALITY PROTEIN: probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
115238707  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
115240037  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
115240300  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
115241605  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
115236848  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
115239466  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
115235472  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
115236626  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
115235333  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
115235559  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
115234728  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
115245189  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
115245462  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
115239017  uncharacterized protein LOC115239017 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
115240157  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
115240164  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
115240191  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
115240254  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
115244617  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
115238428  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
115243666  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
115245676  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
115238859  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
115239545  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
115246257  uncharacterized protein LOC115246257 [KO:K00026] [EC:1.1.1.37]
115233350  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
115232869  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
115246306  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
115235913  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
115237757  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
115238329  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
115238330  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
115240977  uncharacterized protein LOC115240977 [KO:K00162] [EC:1.2.4.1]
115238109  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
115238384  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fex00010  Glycolysis / Gluconeogenesis
fex00053  Ascorbate and aldarate metabolism
fex00061  Fatty acid biosynthesis
fex00062  Fatty acid elongation
fex00071  Fatty acid degradation
fex00190  Oxidative phosphorylation
fex00220  Arginine biosynthesis
fex00250  Alanine, aspartate and glutamate metabolism
fex00280  Valine, leucine and isoleucine degradation
fex00350  Tyrosine metabolism
fex00470  D-Amino acid metabolism
fex00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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