KEGG   PATHWAY: gaf00515
Entry
gaf00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Gambusia affinis (western mosquitofish)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
gaf00515  Mannose type O-glycan biosynthesis
gaf00515

Module
gaf_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:gaf00515]
Other DBs
GO: 0035269
Organism
Gambusia affinis (western mosquitofish) [GN:gaf]
Gene
122846301  pomt2; protein O-mannosyl-transferase 2 [KO:K00728] [EC:2.4.1.109]
122828603  pomt1; protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
122838062  pomgnt1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
122836758  b4galt1l; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122824275  beta-1,4-galactosyltransferase 1-like isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122824447  beta-1,4-galactosyltransferase 2-like isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122841067  b4galt2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122830482  si:dkey-199f5.8; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
122833863  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
122840530  st3gal3b; ST3 beta-galactoside alpha-2,3-sialyltransferase 3b isoform X1 [KO:K00781] [EC:2.4.3.6]
122845020  b3gat1b; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
122832338  b3gat1a; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
122842280  b3gat2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
122827447  chst10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
122846325  fut9a; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
122832407  alpha-(1,3)-fucosyltransferase 4-like [KO:K07632] [EC:2.4.1.-]
122830212  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like isoform X1 [KO:K09661] [EC:2.4.1.-]
122822311  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like isoform X1 [KO:K09661] [EC:2.4.1.-]
122831788  pomgnt2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
122842964  b3galnt2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
122847279  pomk; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
122830706  crppa; D-ribitol-5-phosphate cytidylyltransferase isoform X1 [KO:K21031] [EC:2.7.7.40]
122819414  fktn; fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
122833235  fukutin-related protein [KO:K19873] [EC:2.7.8.-]
122836255  rxylt1; ribitol-5-phosphate xylosyltransferase 1 isoform X1 [KO:K21052] [EC:2.4.2.61]
122820149  b4gat1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
122824429  large2; LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
122826069  large1; LARGE xylosyl- and glucuronyltransferase 1 isoform X1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
gaf00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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