KEGG   PATHWAY: gai00030
Entry
gai00030                    Pathway                                
Name
Pentose phosphate pathway - Granulosicoccus antarcticus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gai00030  Pentose phosphate pathway
gai00030

Module
gai_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gai00030]
gai_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:gai00030]
gai_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:gai00030]
gai_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:gai00030]
gai_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:gai00030]
gai_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde-3P [PATH:gai00030]
Other DBs
GO: 0006098
Organism
Granulosicoccus antarcticus [GN:gai]
Gene
IMCC3135_00275  ydhV; putative oxidoreductase YdhV [KO:K03738] [EC:1.2.7.5]
IMCC3135_00770  gnd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IMCC3135_00790  gntK; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
IMCC3135_00795  gnl_1; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
IMCC3135_04545  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
IMCC3135_05855  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
IMCC3135_06030  kdgK_1; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
IMCC3135_07465  tktA; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
IMCC3135_07480  fbaB; Fructose-bisphosphate aldolase class 1 [KO:K11645] [EC:4.1.2.13]
IMCC3135_08230  zwf1; Glucose-6-phosphate 1-dehydrogenase 1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IMCC3135_09610  gnl_2; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
IMCC3135_10320  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
IMCC3135_10700  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
IMCC3135_10795  xpkA_1; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
IMCC3135_10800  [KO:K01623] [EC:4.1.2.13]
IMCC3135_10805  tkt; Transketolase [KO:K00615] [EC:2.2.1.1]
IMCC3135_11175  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
IMCC3135_14345  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IMCC3135_14350  edd; Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
IMCC3135_14355  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IMCC3135_14360  pgl_1; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
IMCC3135_17810  xpkA_2; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
IMCC3135_19465  talB; Transaldolase B [KO:K00616] [EC:2.2.1.2]
IMCC3135_20930  gnl_3; Gluconolactonase [KO:K01053] [EC:3.1.1.17]
IMCC3135_21430  fba_1; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
IMCC3135_21655  rbsK; Ribokinase [KO:K00852] [EC:2.7.1.15]
IMCC3135_21665  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
IMCC3135_23195  gdhIV; Glucose 1-dehydrogenase 4 [KO:K00034] [EC:1.1.1.47]
IMCC3135_25975  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
IMCC3135_26335  [KO:K11529] [EC:2.7.1.165]
IMCC3135_26985  rbsK_rbiA; Bifunctional ribokinase/ribose-5-phosphate isomerase A [KO:K00852] [EC:2.7.1.15]
IMCC3135_28435  gcd; Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
IMCC3135_29665  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
IMCC3135_32945  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
IMCC3135_33865  fba_2; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
gai00010  Glycolysis / Gluconeogenesis
gai00040  Pentose and glucuronate interconversions
gai00052  Galactose metabolism
gai00230  Purine metabolism
gai00240  Pyrimidine metabolism
gai00340  Histidine metabolism
gai00630  Glyoxylate and dicarboxylate metabolism
gai00750  Vitamin B6 metabolism
KO pathway
ko00030   

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