KEGG   PATHWAY: gce00020
Entry
gce00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gymnodinialimonas ceratoperidinii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gce00020  Citrate cycle (TCA cycle)
gce00020

Module
gce_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gce00020]
gce_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gce00020]
gce_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gce00020]
gce_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gce00020]
gce_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gce00020]
Other DBs
GO: 0006099
Organism
Gymnodinialimonas ceratoperidinii [GN:gce]
Gene
KYE46_00100  [KO:K01610] [EC:4.1.1.49]
KYE46_03240  [KO:K00244] [EC:1.3.5.1]
KYE46_03245  [KO:K00247]
KYE46_03250  [KO:K00246]
KYE46_03255  [KO:K00245] [EC:1.3.5.1]
KYE46_04175  [KO:K00240] [EC:1.3.5.1]
KYE46_04200  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KYE46_04205  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KYE46_04210  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KYE46_04245  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KYE46_04250  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KYE46_04260  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KYE46_04275  [KO:K00164] [EC:1.2.4.2]
KYE46_04280  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KYE46_04305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KYE46_08525  [KO:K01958] [EC:6.4.1.1]
KYE46_09145  acnA; aconitate hydratase AcnA [KO:K27802]
KYE46_10695  [KO:K00031] [EC:1.1.1.42]
KYE46_10700  [KO:K00031] [EC:1.1.1.42]
KYE46_10795  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KYE46_11390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KYE46_12400  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KYE46_12980  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KYE46_12985  [KO:K00162] [EC:1.2.4.1]
KYE46_12995  [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gce00010  Glycolysis / Gluconeogenesis
gce00053  Ascorbate and aldarate metabolism
gce00061  Fatty acid biosynthesis
gce00071  Fatty acid degradation
gce00190  Oxidative phosphorylation
gce00220  Arginine biosynthesis
gce00250  Alanine, aspartate and glutamate metabolism
gce00280  Valine, leucine and isoleucine degradation
gce00350  Tyrosine metabolism
gce00470  D-Amino acid metabolism
gce00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system