KEGG   PATHWAY: git00020
Entry
git00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gordonia iterans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
git00020  Citrate cycle (TCA cycle)
git00020

Module
git_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:git00020]
git_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:git00020]
git_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:git00020]
git_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:git00020]
git_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:git00020]
Other DBs
GO: 0006099
Organism
Gordonia iterans [GN:git]
Gene
C6V83_07100  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C6V83_04830  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C6V83_10685  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C6V83_14920  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C6V83_07460  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C6V83_17570  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6V83_04995  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C6V83_04990  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C6V83_06900  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C6V83_06895  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C6V83_06910  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C6V83_06905  succinate dehydrogenase [KO:K00242]
C6V83_06240  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C6V83_06220  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C6V83_11795  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C6V83_09165  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C6V83_07105  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C6V83_00475  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C6V83_13375  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C6V83_13035  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
git00010  Glycolysis / Gluconeogenesis
git00053  Ascorbate and aldarate metabolism
git00061  Fatty acid biosynthesis
git00062  Fatty acid elongation
git00071  Fatty acid degradation
git00190  Oxidative phosphorylation
git00220  Arginine biosynthesis
git00250  Alanine, aspartate and glutamate metabolism
git00280  Valine, leucine and isoleucine degradation
git00350  Tyrosine metabolism
git00470  D-Amino acid metabolism
git00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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