KEGG   PATHWAY: gjf00020
Entry
gjf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus genomosp. 3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gjf00020  Citrate cycle (TCA cycle)
gjf00020

Module
gjf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gjf00020]
gjf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gjf00020]
gjf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gjf00020]
gjf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gjf00020]
gjf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gjf00020]
Other DBs
GO: 0006099
Organism
Geobacillus genomosp. 3 [GN:gjf]
Gene
M493_14190  citrate synthase [KO:K01647] [EC:2.3.3.1]
M493_06845  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
M493_05850  hypothetical protein [KO:K01681] [EC:4.2.1.3]
M493_05880  hypothetical protein [KO:K01681] [EC:4.2.1.3]
M493_14185  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M493_10700  hypothetical protein [KO:K00030] [EC:1.1.1.41]
M493_05185  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
M493_05190  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
M493_12335  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M493_05385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M493_06605  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M493_12165  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M493_06610  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M493_12160  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M493_06145  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
M493_06140  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M493_14960  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
M493_13845  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M493_13840  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
M493_13850  succinate dehydrogenase cytochrome B558 [KO:K00241]
M493_02520  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M493_01615  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M493_14180  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M493_07105  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M493_05485  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
M493_14750  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M493_16675  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
M493_05370  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
M493_05375  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
M493_16670  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
M493_16680  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
M493_05380  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
M493_09450  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
M493_09455  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gjf00010  Glycolysis / Gluconeogenesis
gjf00053  Ascorbate and aldarate metabolism
gjf00061  Fatty acid biosynthesis
gjf00071  Fatty acid degradation
gjf00190  Oxidative phosphorylation
gjf00220  Arginine biosynthesis
gjf00250  Alanine, aspartate and glutamate metabolism
gjf00280  Valine, leucine and isoleucine degradation
gjf00350  Tyrosine metabolism
gjf00470  D-Amino acid metabolism
gjf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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