KEGG   PATHWAY: gss00030
Entry
gss00030                    Pathway                                
Name
Pentose phosphate pathway - Gallibacterium salpingitidis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gss00030  Pentose phosphate pathway
gss00030

Module
gss_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gss00030]
gss_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gss00030]
gss_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gss00030]
gss_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gss00030]
gss_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:gss00030]
gss_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:gss00030]
Other DBs
GO: 0006098
Organism
Gallibacterium salpingitidis [GN:gss]
Gene
NYR30_00185  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
NYR30_00735  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
NYR30_01000  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
NYR30_01030  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
NYR30_01035  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
NYR30_01060  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
NYR30_01905  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
NYR30_01910  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
NYR30_02100  [KO:K00851] [EC:2.7.1.12]
NYR30_02105  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
NYR30_02165  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NYR30_03055  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
NYR30_05750  fbp; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
NYR30_05975  [KO:K00948] [EC:2.7.6.1]
NYR30_09050  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
NYR30_09575  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
NYR30_10170  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NYR30_10730  [KO:K01053] [EC:3.1.1.17]
NYR30_11765  [KO:K00615] [EC:2.2.1.1]
NYR30_11770  [KO:K00615] [EC:2.2.1.1]
NYR30_12730  [KO:K00874] [EC:2.7.1.45]
NYR30_12900  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
NYR30_13345  gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NYR30_13355  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
NYR30_13360  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NYR30_13495  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NYR30_13545  [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
gss00010  Glycolysis / Gluconeogenesis
gss00040  Pentose and glucuronate interconversions
gss00052  Galactose metabolism
gss00230  Purine metabolism
gss00240  Pyrimidine metabolism
gss00340  Histidine metabolism
gss00630  Glyoxylate and dicarboxylate metabolism
gss00750  Vitamin B6 metabolism
KO pathway
ko00030   

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