KEGG   PATHWAY: gsu00020
Entry
gsu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacter sulfurreducens PCA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gsu00020  Citrate cycle (TCA cycle)
gsu00020

Module
gsu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gsu00020]
gsu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gsu00020]
gsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gsu00020]
gsu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gsu00020]
gsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gsu00020]
Other DBs
GO: 0006099
Organism
Geobacter sulfurreducens PCA [GN:gsu]
Gene
GSU0097  por; pyruvate:ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
GSU0846  acnA; aconitate hydratase 1 [KO:K27802]
GSU0994  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
GSU1058  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
GSU1059  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
GSU1106  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
GSU1176  frdC; succinate dehydrogenase/fumarate reductase, cytochrome b558 subunit [KO:K00241]
GSU1177  frdA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GSU1178  frdB; succinate dehydrogenase/fumarate reductase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
GSU1465  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GSU1466  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
GSU1467  korD; 2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit [KO:K00176] [EC:1.2.7.3]
GSU1468  korA; 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GSU1469  korB; 2-oxoglutarate:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GSU1470  korC; 2-oxoglutarate:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
GSU1660  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GSU1859  vorC; 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
GSU1860  vorB; 2-oxoacid:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GSU1861  vorA; 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GSU1862  vorD; 2-oxoacid:ferredoxin oxidoreductase, ferredoxin subunit [KO:K00176] [EC:1.2.7.3]
GSU2428  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GSU2435  aceF; pyruvate dehydrogenase complex, E2 protein, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
GSU2436  pdhB; pyruvate dehydrogenase complex, E1 protein, beta subunit [KO:K00162] [EC:1.2.4.1]
GSU2443  pdhA; pyruvate dehydrogenase complex, E1 protein, alpha subunit [KO:K00161] [EC:1.2.4.1]
GSU2445  [KO:K27802]
GSU2446  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GSU2448  sucB; 2-oxoglutarate dehydrogenase, E2 protein, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GSU2449  sucA; 2-oxoglutarate dehydrogenase, E1 protein [KO:K00164] [EC:1.2.4.2]
GSU2588  lpdA-2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GSU2654  bkdA; branched-chain 2-oxoacid dehydrogenase complex, E1 protein, alpha subunit, putative [KO:K00161] [EC:1.2.4.1]
GSU2655  bkdB; branched-chain 2-oxoacid dehydrogenase complex, E1 protein, beta subunit, putative [KO:K00162] [EC:1.2.4.1]
GSU2656  bkdF; branched-chain 2-oxoacid dehydrogenase complex, E2 protein, dihydrolipoamide acyltransferase, putative [KO:K00627] [EC:2.3.1.12]
GSU3385  pckA; phosphoenolpyruvate carboxykinase, GTP-dependent [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gsu00010  Glycolysis / Gluconeogenesis
gsu00053  Ascorbate and aldarate metabolism
gsu00061  Fatty acid biosynthesis
gsu00071  Fatty acid degradation
gsu00190  Oxidative phosphorylation
gsu00220  Arginine biosynthesis
gsu00250  Alanine, aspartate and glutamate metabolism
gsu00280  Valine, leucine and isoleucine degradation
gsu00350  Tyrosine metabolism
gsu00470  D-Amino acid metabolism
gsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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