KEGG   PATHWAY: hal00020
Entry
hal00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halobacterium salinarum NRC-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hal00020  Citrate cycle (TCA cycle)
hal00020

Module
hal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hal00020]
hal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hal00020]
hal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hal00020]
hal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hal00020]
Other DBs
GO: 0006099
Organism
Halobacterium salinarum NRC-1 [GN:hal]
Gene
VNG_0473G  porB; pyruvate ferredoxin oxidoreductase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VNG_0474G  porA; pyruvate ferredoxin oxidoreductase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VNG_1125G  korB; putative 2-ketoglutarate ferredoxin oxidoreductase (beta) [KO:K00170] [EC:1.2.7.1]
VNG_1128G  korA; putative 2-ketoglutarate ferredoxin oxidoreductase (alpha) [KO:K00169] [EC:1.2.7.1]
VNG_1306G  sdhA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
VNG_1308G  sdhB; succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
VNG_1309G  sdhD; membrane anchor [KO:K00242]
VNG_1310G  sdhC; succinate dehydrogenase subunit C [KO:K00241]
VNG_1356G  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
VNG_1541G  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
VNG_1542G  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
VNG_1873G  icd; isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
VNG_1926G  pdhA1; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
VNG_2102G  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
VNG_2217G  pdhA2; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
VNG_2218G  pdhB; pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
VNG_2219G  dsa; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
VNG_2220G  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VNG_2291G  cat; 4-hydroxybutyrate CoA transferase [KO:K18118] [EC:2.8.3.18]
VNG_2367G  mdhA; L-malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VNG_2574G  can; aconitase [KO:K27802]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hal00010  Glycolysis / Gluconeogenesis
hal00053  Ascorbate and aldarate metabolism
hal00061  Fatty acid biosynthesis
hal00071  Fatty acid degradation
hal00190  Oxidative phosphorylation
hal00220  Arginine biosynthesis
hal00250  Alanine, aspartate and glutamate metabolism
hal00280  Valine, leucine and isoleucine degradation
hal00350  Tyrosine metabolism
hal00470  D-Amino acid metabolism
hal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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