KEGG   PATHWAY: halt00020
Entry
halt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ruania alkalisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halt00020  Citrate cycle (TCA cycle)
halt00020

Module
halt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:halt00020]
halt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:halt00020]
halt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:halt00020]
halt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:halt00020]
halt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:halt00020]
Other DBs
GO: 0006099
Organism
Ruania alkalisoli [GN:halt]
Gene
IM660_14420  citrate synthase [KO:K01647] [EC:2.3.3.1]
IM660_04310  citrate synthase [KO:K01647] [EC:2.3.3.1]
IM660_10200  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IM660_14485  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IM660_13480  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IM660_18980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IM660_10555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IM660_05375  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IM660_05370  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IM660_16020  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
IM660_13545  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM660_13540  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM660_13550  succinate dehydrogenase cytochrome b subunit [KO:K00241]
IM660_05235  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IM660_05415  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IM660_11290  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IM660_10770  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IM660_10560  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halt00010  Glycolysis / Gluconeogenesis
halt00053  Ascorbate and aldarate metabolism
halt00061  Fatty acid biosynthesis
halt00071  Fatty acid degradation
halt00190  Oxidative phosphorylation
halt00220  Arginine biosynthesis
halt00250  Alanine, aspartate and glutamate metabolism
halt00280  Valine, leucine and isoleucine degradation
halt00350  Tyrosine metabolism
halt00470  D-Amino acid metabolism
halt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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