KEGG   PATHWAY: hgl00515
Entry
hgl00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Heterocephalus glaber (naked mole-rat)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
hgl00515  Mannose type O-glycan biosynthesis
hgl00515

Module
hgl_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:hgl00515]
Other DBs
GO: 0035269
Organism
Heterocephalus glaber (naked mole-rat) [GN:hgl]
Gene
101706534  Pomt2; protein O-mannosyltransferase 2 [KO:K00728] [EC:2.4.1.109]
101719016  Pomt1; protein O-mannosyltransferase 1 [KO:K00728] [EC:2.4.1.109]
101720446  Pomgnt1; protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [KO:K09666] [EC:2.4.1.-]
101698779  uncharacterized protein DKFZp434B061-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
101721414  B4galt1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
101718811  B4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
101702700  B4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
101716398  St3gal3; ST3 beta-galactoside alpha-2,3-sialyltransferase 3 [KO:K00781] [EC:2.4.3.6]
101710890  B3gat1; beta-1,3-glucuronyltransferase 1 [KO:K00735] [EC:2.4.1.135]
101709113  B3gat2; beta-1,3-glucuronyltransferase 2 [KO:K10157] [EC:2.4.1.135]
101713397  carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
101701809  Chst10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
101722848  Fut9; fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
101711725  Fut4; fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
101721905  Mgat5b; mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B [KO:K09661] [EC:2.4.1.-]
101711700  Pomgnt2; protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [KO:K18207] [EC:2.4.1.312]
101697517  B3galnt2; beta-1,3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
101699969  Pomk; protein-O-mannose kinase [KO:K17547] [EC:2.7.1.183]
101708024  Ispd; isoprenoid synthase domain containing [KO:K21031] [EC:2.7.7.40]
101701255  Fktn; fukutin [KO:K19872] [EC:2.7.8.-]
101720645  Fkrp; fukutin related protein [KO:K19873] [EC:2.7.8.-]
101716790  Tmem5; transmembrane protein 5 [KO:K21052] [EC:2.4.2.61]
106007506  transmembrane protein 5-like [KO:K21052] [EC:2.4.2.61]
101724680  B4gat1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
101713789  Large1; LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
101699577  Large2; LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
hgl00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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