KEGG   PATHWAY: hmg00020
Entry
hmg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hydra vulgaris (swiftwater hydra)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hmg00020  Citrate cycle (TCA cycle)
hmg00020

Module
hmg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hmg00020]
hmg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hmg00020]
hmg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hmg00020]
hmg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hmg00020]
hmg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hmg00020]
Other DBs
GO: 0006099
Organism
Hydra vulgaris (swiftwater hydra) [GN:hmg]
Gene
100210073  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
100201862  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
100204523  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100203396  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100208927  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
100201384  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100203218  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
100204979  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
100203774  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
100199340  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
100203520  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100212510  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100204599  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100206952  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100210215  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
100206520  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
100215666  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
100205518  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
100204298  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100208718  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100210170  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
100200393  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100199843  phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
100197663  phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
100213324  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
101234944  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
100207420  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100214734  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hmg00010  Glycolysis / Gluconeogenesis
hmg00053  Ascorbate and aldarate metabolism
hmg00061  Fatty acid biosynthesis
hmg00062  Fatty acid elongation
hmg00071  Fatty acid degradation
hmg00190  Oxidative phosphorylation
hmg00220  Arginine biosynthesis
hmg00250  Alanine, aspartate and glutamate metabolism
hmg00280  Valine, leucine and isoleucine degradation
hmg00350  Tyrosine metabolism
hmg00470  D-Amino acid metabolism
hmg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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