KEGG   PATHWAY: hmh00020
Entry
hmh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hylobates moloch (silvery gibbon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hmh00020  Citrate cycle (TCA cycle)
hmh00020

Module
hmh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hmh00020]
hmh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hmh00020]
hmh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hmh00020]
hmh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hmh00020]
hmh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hmh00020]
Other DBs
GO: 0006099
Organism
Hylobates moloch (silvery gibbon) [GN:hmh]
Gene
116456796  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
116457605  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
116457929  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
116458932  ACO2; aconitate hydratase, mitochondrial isoform X2 [KO:K01681] [EC:4.2.1.3]
116460917  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
116461134  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
116461216  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
116464049  [KO:K00235] [EC:1.3.5.1]
116466640  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X2 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116467253  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116469064  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
116469174  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
116469879  [KO:K00658] [EC:2.3.1.61]
116471056  [KO:K00031] [EC:1.1.1.42]
116473332  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
116474845  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
116475113  ACO1; cytoplasmic aconitate hydratase isoform X2 [KO:K01681] [EC:4.2.1.3]
116476429  [KO:K00030] [EC:1.1.1.41]
116476935  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
116476941  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
116479693  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116480914  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
116482478  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
116482601  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
116483344  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116483800  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
116484543  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
116484949  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
116810376  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
116811231  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
116812180  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
116812281  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
116812481  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
116812984  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
116813255  [KO:K00627] [EC:2.3.1.12]
116814237  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
116814392  [KO:K00237]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hmh00010  Glycolysis / Gluconeogenesis
hmh00053  Ascorbate and aldarate metabolism
hmh00061  Fatty acid biosynthesis
hmh00062  Fatty acid elongation
hmh00071  Fatty acid degradation
hmh00190  Oxidative phosphorylation
hmh00220  Arginine biosynthesis
hmh00250  Alanine, aspartate and glutamate metabolism
hmh00280  Valine, leucine and isoleucine degradation
hmh00350  Tyrosine metabolism
hmh00470  D-Amino acid metabolism
hmh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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