KEGG   PATHWAY: hsb00020
Entry
hsb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hymenobacter sublimis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsb00020  Citrate cycle (TCA cycle)
hsb00020

Module
hsb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hsb00020]
hsb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hsb00020]
hsb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsb00020]
hsb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hsb00020]
hsb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsb00020]
Other DBs
GO: 0006099
Organism
Hymenobacter sublimis [GN:hsb]
Gene
MWH26_07930  citrate synthase [KO:K01647] [EC:2.3.3.1]
MWH26_04310  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MWH26_01815  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MWH26_18485  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
MWH26_16450  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MWH26_07395  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MWH26_16445  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MWH26_03715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MWH26_16395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MWH26_01970  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MWH26_04490  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MWH26_04240  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MWH26_04235  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MWH26_04245  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MWH26_17645  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MWH26_02975  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MWH26_05455  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MWH26_05930  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MWH26_09365  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MWH26_18155  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MWH26_06555  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MWH26_11825  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsb00010  Glycolysis / Gluconeogenesis
hsb00053  Ascorbate and aldarate metabolism
hsb00061  Fatty acid biosynthesis
hsb00071  Fatty acid degradation
hsb00190  Oxidative phosphorylation
hsb00220  Arginine biosynthesis
hsb00250  Alanine, aspartate and glutamate metabolism
hsb00280  Valine, leucine and isoleucine degradation
hsb00350  Tyrosine metabolism
hsb00470  D-Amino acid metabolism
hsb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system