KEGG   PATHWAY: ifu03050
Entry
ifu03050                    Pathway                                
Name
Proteasome - Ictalurus furcatus (blue catfish)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ifu03050  Proteasome
ifu03050

Other DBs
GO: 0000502
Organism
Ictalurus furcatus (blue catfish) [GN:ifu]
Gene
128599609  psma2a; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
128599943  psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
128600518  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
128600541  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
128600592  psma2b; proteasome_alpha_type_2 domain-containing protein [KO:K02726] [EC:3.4.25.1]
128600650  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
128600685  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
128601182  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
128601204  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
128601503  psma6b; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
128601940  psmb13a; proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
128601941  [KO:K02740] [EC:3.4.25.1]
128602069  psmb8a; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
128602070  psmb12; proteasome 20S subunit beta 12 isoform X1 [KO:K02738] [EC:3.4.25.1]
128602278  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
128602662  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
128605275  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
128606839  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
128609644  psmb5; proteasome subunit beta type-5 isoform X1 [KO:K02737] [EC:3.4.25.1]
128611064  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
128611655  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
128612363  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
128612608  psmc1a; proteasome 26S subunit, ATPase 1a [KO:K03062]
128612795  psma6a; proteasome subunit alpha type-6a [KO:K02730] [EC:3.4.25.1]
128613490  psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
128613760  [KO:K03039]
128613825  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
128613952  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
128614627  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
128615342  psmd4a; 26S proteasome non-ATPase regulatory subunit 4a [KO:K03029]
128615374  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
128616166  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
128616725  psme2; proteasome activator complex subunit 2 [KO:K06697]
128616938  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
128616970  psme3; proteasome activator complex subunit 3 [KO:K06698]
128617016  psme4b; proteasome activator complex subunit 4B isoform X1 [KO:K06699]
128617516  psmc5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
128617968  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
128618069  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
128619018  adrm1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
128619324  [KO:K06691]
128619638  [KO:K02731] [EC:3.4.25.1]
128619645  psmb11b; proteasome subunit beta type-11b [KO:K11598] [EC:3.4.25.1]
128621506  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
128621677  psma6l; proteasome 20S subunit alpha 6, like isoform X1 [KO:K02730] [EC:3.4.25.1]
128622241  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
128622266  pomp; proteasome maturation protein [KO:K11599]
128623205  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
128623397  ifng1; interferon gamma 1 isoform X1 [KO:K04687]
128624756  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
128624845  psme1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
128624865  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
128625582  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
ifu04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

DBGET integrated database retrieval system