KEGG   PATHWAY: ifu04120
Entry
ifu04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Ictalurus furcatus (blue catfish)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ifu04120  Ubiquitin mediated proteolysis
ifu04120

Other DBs
GO: 0016567
Organism
Ictalurus furcatus (blue catfish) [GN:ifu]
Gene
128598902  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
128599031  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
128599138  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
128599470  cul1b; cullin-1b [KO:K03347]
128599497  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
128599712  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
128599794  [KO:K10602] [EC:2.3.2.27]
128599887  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
128600165  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
128600269  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
128600526  ube2ia; SUMO-conjugating enzyme UBC9-B [KO:K10577]
128600607  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
128600673  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
128600991  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
128601905  ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
128601915  cul4a; cullin-4A isoform X1 [KO:K10609]
128601970  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
128602228  [KO:K10573] [EC:2.3.2.23]
128602247  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
128602748  pias1a; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
128603046  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
128603207  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
128603469  ubb; polyubiquitin-B [KO:K08770]
128603541  anapc2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
128603696  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
128603727  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
128603792  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
128604124  elob; elongin-B [KO:K03873]
128604128  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
128604152  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
128604299  [KO:K10260]
128604501  uba6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
128605094  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
128605317  anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
128605352  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
128605392  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
128605451  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
128605713  fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
128606040  [KO:K10614] [EC:2.3.2.26]
128606386  ddb1; DNA damage-binding protein 1 [KO:K10610]
128606473  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
128606627  ube2na; ubiquitin-conjugating enzyme E2Na isoform X1 [KO:K10580] [EC:2.3.2.23]
128606682  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
128606714  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
128606857  trip12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
128606967  rnf7; RING-box protein 2 [KO:K10611]
128607091  nedd4a; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K10591] [EC:2.3.2.26]
128607353  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
128607442  [KO:K07868]
128607779  ubox5; RING finger protein 37 [KO:K10600]
128608084  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
128608115  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
128608211  fzr1a; fizzy/cell division cycle 20 related 1a isoform X1 [KO:K03364]
128608349  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
128608460  [KO:K10573] [EC:2.3.2.23]
128608510  ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
128608523  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
128608756  cdc16; cell division cycle protein 16 homolog [KO:K03353]
128609135  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
128609501  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
128609673  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
128609740  fzr1b; fizzy-related protein homolog [KO:K03364]
128610470  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
128611048  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
128611115  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
128611400  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
128611436  xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
128611437  [KO:K04725] [EC:2.3.2.27]
128611450  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
128611466  cul4b; cullin-4B [KO:K10609]
128611775  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
128611785  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
128611806  det1; DET1 homolog [KO:K10571]
128612947  ube2d1a; ubiquitin-conjugating enzyme E2 D1a [KO:K06689] [EC:2.3.2.23]
128613096  birc6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
128613460  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
128614020  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
128614478  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
128614527  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
128614570  cul2; cullin-2 isoform X1 [KO:K03870]
128614641  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
128614688  [KO:K05633] [EC:2.3.2.26]
128614701  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
128614727  itcha; itchy E3 ubiquitin protein ligase a isoform X1 [KO:K05632] [EC:2.3.2.26]
128614862  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
128615369  stub1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
128615449  anapc11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
128615504  [KO:K04678] [EC:2.3.2.26]
128615623  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
128615651  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
128615719  keap1b; kelch-like ECH-associated protein 1B isoform X1 [KO:K10456]
128615949  [KO:K20217] [EC:2.3.2.23]
128615951  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
128615965  cdc27; cell division cycle protein 27 homolog [KO:K03350]
128615994  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
128616140  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
128616551  ube2d1b; ubiquitin-conjugating enzyme E2 D1b isoform X1 [KO:K06689] [EC:2.3.2.23]
128616622  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
128617048  mgrn1a; probable E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
128617123  rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
128617136  [KO:K03873]
128617390  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
128617523  [KO:K10605] [EC:2.3.2.27]
128617700  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
128617936  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
128618155  ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
128618975  ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
128618998  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
128619059  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
128619142  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
128619302  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
128619317  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
128619636  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
128619727  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
128619773  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
128619972  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
128620127  fbxw11b; F-box and WD repeat domain-containing 11-B isoform X1 [KO:K03362]
128620211  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
128620290  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
128620752  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
128620953  sae1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
128620983  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
128621110  cul5a; cullin-5a isoform X1 [KO:K10612]
128621647  aire; autoimmune regulator [KO:K10603]
128621799  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
128622002  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
128622050  cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
128622156  [KO:K10594] [EC:2.3.2.26]
128622163  [KO:K03868] [EC:2.3.2.32]
128622207  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
128622236  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
128622279  ube2r2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
128622467  [KO:K10574] [EC:2.3.2.23]
128622491  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
128622566  skp1; S-phase kinase-associated protein 1 [KO:K03094]
128622770  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
128622968  ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
128623154  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
128623919  cul3b; cullin-3b isoform X1 [KO:K03869]
128623942  cul1a; cullin-1a [KO:K03347]
128624034  cdc20; cell division cycle protein 20 homolog [KO:K03363]
128624094  ube2d2l; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like [KO:K06689] [EC:2.3.2.23]
128624145  [KO:K03869]
128624151  [KO:K03364]
128624172  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
128624175  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
128624240  pias4b; E3 SUMO-protein ligase PIAS4b [KO:K16065] [EC:2.3.2.27]
128624353  elocb; elongin C paralog b [KO:K03872]
128624397  ube2wa; probable ubiquitin-conjugating enzyme E2 W-A isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
128624504  [KO:K03869]
128624537  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
128625017  fbxo2; F-box only protein 2 [KO:K10099]
128625388  [KO:K04554] [EC:2.3.2.23]
128625404  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
128625412  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
128625567  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
128625603  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
128625635  pias2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
128625699  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ifu03050  Proteasome
KO pathway
ko04120   

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