KEGG   PATHWAY: jte00020
Entry
jte00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Janibacter indicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jte00020  Citrate cycle (TCA cycle)
jte00020

Module
jte_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:jte00020]
jte_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:jte00020]
jte_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:jte00020]
jte_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:jte00020]
Other DBs
GO: 0006099
Organism
Janibacter indicus [GN:jte]
Gene
ASJ30_03445  hypothetical protein [KO:K01647] [EC:2.3.3.1]
ASJ30_01985  citrate synthase [KO:K01647] [EC:2.3.3.1]
ASJ30_06870  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ASJ30_11665  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ASJ30_04120  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ASJ30_10210  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASJ30_06425  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASJ30_02410  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ASJ30_02405  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ASJ30_11770  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ASJ30_11775  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ASJ30_06335  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ASJ30_12420  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ASJ30_12415  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ASJ30_12425  succinate dehydrogenase [KO:K00241]
ASJ30_15025  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ASJ30_11695  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ASJ30_09455  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ASJ30_13775  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ASJ30_09290  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
jte00010  Glycolysis / Gluconeogenesis
jte00061  Fatty acid biosynthesis
jte00071  Fatty acid degradation
jte00190  Oxidative phosphorylation
jte00220  Arginine biosynthesis
jte00250  Alanine, aspartate and glutamate metabolism
jte00280  Valine, leucine and isoleucine degradation
jte00350  Tyrosine metabolism
jte00470  D-Amino acid metabolism
jte00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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