KEGG   PATHWAY: laj00020
Entry
laj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira tipperaryensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
laj00020  Citrate cycle (TCA cycle)
laj00020

Module
laj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:laj00020]
laj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:laj00020]
laj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:laj00020]
laj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:laj00020]
laj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:laj00020]
Other DBs
GO: 0006099
Organism
Leptospira tipperaryensis [GN:laj]
Gene
A0128_06250  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A0128_10820  citrate synthase [KO:K01647] [EC:2.3.3.1]
A0128_10825  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
A0128_03675  citrate synthase [KO:K01647] [EC:2.3.3.1]
A0128_21585  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A0128_18515  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0128_01365  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0128_05485  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A0128_05475  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0128_12175  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0128_05480  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0128_06065  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A0128_06070  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A0128_10960  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A0128_10965  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
A0128_10955  succinate:quinone oxidoreductase [KO:K00241]
A0128_00840  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0128_09220  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A0128_18285  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A0128_08695  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A0128_08690  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
A0128_08685  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
laj00010  Glycolysis / Gluconeogenesis
laj00053  Ascorbate and aldarate metabolism
laj00061  Fatty acid biosynthesis
laj00071  Fatty acid degradation
laj00190  Oxidative phosphorylation
laj00220  Arginine biosynthesis
laj00250  Alanine, aspartate and glutamate metabolism
laj00280  Valine, leucine and isoleucine degradation
laj00350  Tyrosine metabolism
laj00470  D-Amino acid metabolism
laj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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