KEGG   PATHWAY: lic00020
Entry
lic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira interrogans serovar Copenhageni
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lic00020  Citrate cycle (TCA cycle)
lic00020

Module
lic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lic00020]
lic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lic00020]
lic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lic00020]
lic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lic00020]
Other DBs
GO: 0006099
Organism
Leptospira interrogans serovar Copenhageni [GN:lic]
Gene
LIC_10162  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LIC_10216  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LIC_11159  [KO:K00382] [EC:1.8.1.4]
LIC_11781  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LIC_11897  acoA; pyruvate dehydrogenase alpha2 subunit protein [KO:K00161] [EC:1.2.4.1]
LIC_11898  acoB; pyruvate dehydrogenase beta2 subunit protein [KO:K00162] [EC:1.2.4.1]
LIC_12001  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
LIC_12002  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LIC_12003  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LIC_12474  odhA; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LIC_12475  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LIC_12476  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LIC_12573  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
LIC_12574  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
LIC_12829  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LIC_12925  [KO:K01647] [EC:2.3.3.1]
LIC_13244  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LIC_13328  [KO:K00031] [EC:1.1.1.42]
LIC_20249  acnA; aconitate hydratase [KO:K27802]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lic00010  Glycolysis / Gluconeogenesis
lic00053  Ascorbate and aldarate metabolism
lic00061  Fatty acid biosynthesis
lic00071  Fatty acid degradation
lic00190  Oxidative phosphorylation
lic00220  Arginine biosynthesis
lic00250  Alanine, aspartate and glutamate metabolism
lic00280  Valine, leucine and isoleucine degradation
lic00350  Tyrosine metabolism
lic00470  D-Amino acid metabolism
lic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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