KEGG   PATHWAY: lil00020
Entry
lil00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira interrogans serovar Lai 56601
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lil00020  Citrate cycle (TCA cycle)
lil00020

Module
lil_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lil00020]
lil_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lil00020]
lil_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lil00020]
lil_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lil00020]
lil_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lil00020]
Other DBs
GO: 0006099
Organism
Leptospira interrogans serovar Lai 56601 [GN:lil]
Gene
LA_0671  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LA_0790  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LB_327  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LA_4171  leuB; isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LA_4067  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LA_1224  sucA; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
LA_1222  aceF; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
LA_1223  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LA_2886  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LA_1101  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
LA_1102  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
LA_1897  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LA_1896  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LA_1898  succinate:quinone oxidoreductase (SQR)-like protein [KO:K00241]
LA_0185  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LA_2139  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LA_0251  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LA_2010  acoA; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
LA_2009  acoB; pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
LA_2008  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lil00010  Glycolysis / Gluconeogenesis
lil00053  Ascorbate and aldarate metabolism
lil00061  Fatty acid biosynthesis
lil00071  Fatty acid degradation
lil00190  Oxidative phosphorylation
lil00220  Arginine biosynthesis
lil00250  Alanine, aspartate and glutamate metabolism
lil00280  Valine, leucine and isoleucine degradation
lil00350  Tyrosine metabolism
lil00470  D-Amino acid metabolism
lil00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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